Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0339 ATGTCTAAGAGGGTTCTATGCAAATTCTTTGCCCATGGAGCATGTTTGAAGGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGCTCCTCCAAACAACATATGTACGTTTTATCAGAAAGGAGTCTGTGCCTATGGTAGTCGCTGCAGATATGACCATGTCAAAGCTTCCCGTGAACAGTCCTATCATCCATCTTCATCTGCAAATGTACACCCCCAAAATTCTGATTCCTCTATAGTTGGTAGTACTAGAGTTATATCAAATGGGGCTGCTACAATTCCTGAATTGTCTTCTAGTAGTGGACCTTCCTTTCCTATTATTCCTGCATGGAATGGAGAATCTGAGTTTCATGTTCCTGATTGTTTTAATGCTTGGAATCCAGAATCTGGGTATCAAGACTTTTTAGAGGATAGTGATGTCAGCGAATCCAGAATTACTGATCCTTCAGAGCGTCCTATCTGTTCATTTGCTGCTGCTGGTAATTGTCCCAGGGAGGAGAAATGCCCTTTTATTCACGGAGATTTGTGTCCTACCTGTGGAAAGCACTGTTTACATCCTTTCCGACCTGAAGAAAGAGAAGATCATATGACGACTTGCCAGAAAAAGCAAAAGCATCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTTTCAAAGCCGACAGCAGCTGAACGCAAGTTTGGGCTGCTATCTGAATGTGATCATCCCTTCTGCATATCTTGTATTAGGAATTGGCGTAGTAGTAACCCAACCTTGGGAATGGATGTGAATACCACATTGAGGGCCTGTCCAATCTGTCGTAAGCTCTCTTACTTTGTCATTCCAAGTGTCATTTGGTACTCCACAACTGAAGAAAAACAGGAAATCGTCGACAGCTACAAGGAAAAGCTCAAGTCAATTGATTGCAAGCATTTTGACTTTGGGAATGGAAACTGCCCTTTTGGTATTAGCTGTTTCTACAAGCATGCTTACCGAGATGGAAGACTTGAGCAAGTAGTTCTGAGACATCTTGGGGCTGCAGATGGCAACACTGTGATTGCTAAAGACATCAGGTTATCAGATTTCCTTGCTAATATGCATTTAAGATGA 1113 0.4223 MSKRVLCKFFAHGACLKGEHCEFSHDWKAPPNNICTFYQKGVCAYGSRCRYDHVKASREQSYHPSSSANVHPQNSDSSIVGSTRVISNGAATIPELSSSSGPSFPIIPAWNGESEFHVPDCFNAWNPESGYQDFLEDSDVSESRITDPSERPICSFAAAGNCPREEKCPFIHGDLCPTCGKHCLHPFRPEEREDHMTTCQKKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNTTLRACPICRKLSYFVIPSVIWYSTTEEKQEIVDSYKEKLKSIDCKHFDFGNGNCPFGISCFYKHAYRDGRLEQVVLRHLGAADGNTVIAKDIRLSDFLANMHLR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0339 370 Pfam RNA-binding, Nab2-type zinc finger 309 331 - -
Lele11g0339 370 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Lele11g0339 370 Pfam Zinc finger, C3HC4 type (RING finger) 217 274 IPR018957 GO:0046872
Lele11g0339 370 ProSiteProfiles Zinc finger C3H1-type profile. 304 333 IPR000571 GO:0046872
Lele11g0339 370 Gene3D - 1 32 - -
Lele11g0339 370 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Lele11g0339 370 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Lele11g0339 370 SMART ring_2 217 274 IPR001841 -
Lele11g0339 370 ProSitePatterns Zinc finger RING-type signature. 241 250 IPR017907 -
Lele11g0339 370 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 173 IPR000571 GO:0046872
Lele11g0339 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 280 IPR013083 -
Lele11g0339 370 SUPERFAMILY RING/U-box 206 281 - -
Lele11g0339 370 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Lele11g0339 370 ProSiteProfiles Zinc finger RING-type profile. 217 275 IPR001841 -
Lele11g0339 370 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Lele11g0339 370 SMART c3hfinal6 149 174 IPR000571 GO:0046872
Lele11g0339 370 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Lele11g0339 370 SMART c3hfinal6 304 332 IPR000571 GO:0046872
Lele11g0339 370 Gene3D - 33 176 - -
Lele11g0339 370 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Lele11g0339 370 CDD RING-HC_MKRN 217 275 - -
Lele11g0339 370 PANTHER MAKORIN-RELATED 5 350 IPR045072 GO:0000209|GO:0061630
Lele11g0339 370 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Lele11g0339 370 ProSiteProfiles Zinc finger C3H1-type profile. 148 175 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0339 Lele-ChrLele11 3448751 3451467 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele11g0339 zf-C3HC4 4.9e-07 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0341 09 2436981 2439138 Lele11g0339 11 3448751 3451467 hybridization
Lele10g0325 10 2189401 2192979 Lele11g0339 11 3448751 3451467 hybridization