Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0337 ATGACAGATCCTCACTCTAATTTCTTCTCCAAGTGCTTCAACTTCATCCCCCTCCATCCTCACTTCTACTCTTCCAATTCCTACAGCAGTTTCTCCATTCAATTCCAACCTCCTCCTTCTCTTCCTCCACCTCCTCCTCCTTCTTCTTCCCCAAGAGAAGCCCTTCCTCTGCTGAACAATCTCAGTCTCCTCACAAACCAGACCAACAAGCAAAGAACTACTGATCATCAACAACCCTCAACCAATAAGGAACAACCATTAATTTTTCAAGCCAAAGAAGCAGCTGCAGAGACTGGTAGTGATGAAACTGTGACTGTTGCTCTACGCATAGGACTTCCTTCCATGACTGCTACTAATAATACTACTAGCAGGAGCAGTAGTAATACTCAGATTAATTCAAACTCCTACTCCTCCATTGAAACGACGACCATGGAGAAAGATGAAGTTGGTGGTGGTGGTGTCGTTTCGGGACACTACTCTTTTGATCCCTTGAACAAAGGCCAGTACTGGATCCCAACTCCTTCTCAGATTCTCATCGGCCCTACTCAGTTCTCTTGCCCCGTCTGCTCCAAAACCTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAGTACAGAAAGGGACCAGATTCTCTAAGAGGAACACAACCTACGGCAATGCTAAGGCTTCCATGTTTCTGTTGTGCACCAAACTGCAAGCACAACATAGACCATCCAAGGGCAAGGCCTCTGAAGGATTTCAGAACCCTGCAAACTCATTACAAGAGGAAGCACGGCACAAAACCCTACCTGTGCAGAAAATGCAGTAAAGCTTTCGCTGTTAAAGGTGACTGGAGAACCCACGAGAAGAACTGTGGCACAATCTGGTATTGCCTTTGTGGTTCTGACTTCAAACACAAGAGATCTCTCAAAGACCACATTAGGGCTTTTGGCCATGGCCATGGCGGAGCTTTTCCTTCTGGTCTTAATGATAATTGCAGCTTGCACGAAGAAGATGAAGCAAATTCTGAGATCGAACATGATGGCGATGATATCTCAGTGTGA 1059 0.4561 MTDPHSNFFSKCFNFIPLHPHFYSSNSYSSFSIQFQPPPSLPPPPPPSSSPREALPLLNNLSLLTNQTNKQRTTDHQQPSTNKEQPLIFQAKEAAAETGSDETVTVALRIGLPSMTATNNTTSRSSSNTQINSNSYSSIETTTMEKDEVGGGGVVSGHYSFDPLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPNCKHNIDHPRARPLKDFRTLQTHYKRKHGTKPYLCRKCSKAFAVKGDWRTHEKNCGTIWYCLCGSDFKHKRSLKDHIRAFGHGHGGAFPSGLNDNCSLHEEDEANSEIEHDGDDISV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0337 352 FunFam Zinc finger protein WIP2 237 319 - -
Lele11g0337 352 SUPERFAMILY beta-beta-alpha zinc fingers 177 206 IPR036236 -
Lele11g0337 352 Pfam Zinc finger, C2H2 type 184 203 IPR013087 -
Lele11g0337 352 Gene3D Classic Zinc Finger 183 206 - -
Lele11g0337 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Lele11g0337 352 MobiDBLite consensus disorder prediction 33 54 - -
Lele11g0337 352 MobiDBLite consensus disorder prediction 36 52 - -
Lele11g0337 352 SUPERFAMILY beta-beta-alpha zinc fingers 252 288 IPR036236 -
Lele11g0337 352 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Lele11g0337 352 PANTHER ZINC FINGER PROTEIN WIP2 26 345 IPR043584 GO:0003700|GO:0010468
Lele11g0337 352 FunFam zinc finger protein WIP2-like 183 206 - -
Lele11g0337 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 324 IPR013087 -
Lele11g0337 352 SMART c2h2final6 268 288 IPR013087 -
Lele11g0337 352 SMART c2h2final6 184 206 IPR013087 -
Lele11g0337 352 SMART c2h2final6 294 317 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0337 Lele-ChrLele11 3433716 3436236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0337 1 349 C2H2 Transcription Factor Family AT3G57670 51.938 8.88e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele11g0337 zf-C2H2_6 9.5e-05 CL0361