LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g0335	ATGCCAGCGTGCAGTATTGCTGCAACAACAGGCTCGCCAATCTTTGTGGCTGCTCCAGCTGAGAAAAGACATTTCCTTGTGGACTTTCTCTTGGGTGGAGTTTCAGTTGCTGTATCAAAAACTGCTGCTGCTCCCATTGACCGTGTCAAACTTCTGACACAGAACCAAGATGAGATGATTAAAGCCGGTAGGCTCTCTGAGCCCTATAAGGGTATTGGTGATTGTTTTAACCGAACAATTCAATCTGAAGGCGCTGTTTCCCTTTGGAGAGGAGCGGAACTTTGCTTTGAAGGACTGCTTTTTAATTTCAAGAAGGACAAGGATGGTTACGGGAGATGGTTTGTAGGCAACTTGGCCTCTGGAGGAGCTGCGGGTGCTTCATCTCTGTTGTTTGTTTACTCCCTCGACTATGCTCGAACCCGTCTCCCAAATGATGCAAAGGCCGCGAAGAAGGGTGGAGGAGAAAGGCAATTCAATGGGCTTGTTGATGTCTACAAGAAGACCTTGGCTTCTGATGGTATTGCTGGCCTTTACCGTGGTTTCAACATCTCATGCGTTGGAATCATTGTGTATCTTTATTTTAGAATGTATGATTCCCTGAAGCCAGTGCTCTTGACTGGAAAGTTACAGTCAAGTACAAGAGCTCCATGGATGCATTTTACTCAAATTCTCAAGAATGAAGGCTATAAGTCCCTGTTAAAGGGAGCAGGTGCTAACATCCTCCTTGCCGTTGCCGGAGCCGGTGTACTCGCCGGTTATGACAAGCCACAGATTAAGATGAATGATGGTAGACCAATGGAGCTGCATTACATAAACCCTGGTTTTCAATCTACTACAACCGAAAGCTTCATGGAGTTCTTCGACGGACCGCCAGTGGATTATGATCACGCTGGTCCAATTCCTTATCAGGAATACTGGTCAATGAACATGAACCCTTACAAGTTTGTATTGTCTGGTCCGGATAGTGCATCTTATTATGGTTCTTACGAAGAAGATAATAGTTTCCCAAGACTGGAGGTCGACAGGGGAGAGTGGGAATATCCTTTCACAACGACCACTGAGGAGCCCACCACAACAGACTCTCCATCCAGAAGGGATGGAGTGAATGGCATGCAGACCATCCCTGAAGAATCCAGCCCAAATCGTCATGATTCCAGTAATGCTGCGGTTATATGGCAAGACAATATCGATCCAGATAATATGACTTATGAGGAATTGCTGGACTTGGGTGAGGCAGTTGGAACTCAAAGCCGAGGTCTTTCTCAAGAACTTATTGATTTACTCCCGACTTCGAAGTACAAATTTGGAAGCTTATTTAAAAGAAAAAATTTTGGGAAAAGGTGCGTCGTTTGTCAGATGACGTATAGAAGAGGTGACCAACAAATCAAATTACCGTGCAGGCATGTTTACCATGGTGAATGCATCTCTAAATGGCTTAGCATTAACAAGAAATGCCCAGTTTGCAACGTTGAGGTATTTGGTGAGGAATCAACACATTAG	1500	0.4493	MPACSIAATTGSPIFVAAPAEKRHFLVDFLLGGVSVAVSKTAAAPIDRVKLLTQNQDEMIKAGRLSEPYKGIGDCFNRTIQSEGAVSLWRGAELCFEGLLFNFKKDKDGYGRWFVGNLASGGAAGASSLLFVYSLDYARTRLPNDAKAAKKGGGERQFNGLVDVYKKTLASDGIAGLYRGFNISCVGIIVYLYFRMYDSLKPVLLTGKLQSSTRAPWMHFTQILKNEGYKSLLKGAGANILLAVAGAGVLAGYDKPQIKMNDGRPMELHYINPGFQSTTTESFMEFFDGPPVDYDHAGPIPYQEYWSMNMNPYKFVLSGPDSASYYGSYEEDNSFPRLEVDRGEWEYPFTTTTEEPTTTDSPSRRDGVNGMQTIPEESSPNRHDSSNAAVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDLLPTSKYKFGSLFKRKNFGKRCVVCQMTYRRGDQQIKLPCRHVYHGECISKWLSINKKCPVCNVEVFGEESTH	499

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g0335	499	MobiDBLite	consensus disorder prediction	351	385	-	-
	Lele11g0335	499	SUPERFAMILY	RING/U-box	447	493	-	-
	Lele11g0335	499	Pfam	Mitochondrial carrier protein	113	206	IPR018108	-
	Lele11g0335	499	Pfam	Mitochondrial carrier protein	24	92	IPR018108	-
	Lele11g0335	499	SUPERFAMILY	Mitochondrial carrier	23	254	IPR023395	-
	Lele11g0335	499	PRINTS	Adenine nucleotide translocator signature	163	176	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Lele11g0335	499	PRINTS	Adenine nucleotide translocator signature	69	90	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Lele11g0335	499	PRINTS	Adenine nucleotide translocator signature	25	37	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Lele11g0335	499	PANTHER	ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED	220	260	IPR002113	GO:0005471\|GO:0005743\|GO:0140021\|GO:1990544
	Lele11g0335	499	PRINTS	Mitochondrial carrier protein signature	41	55	IPR002067	GO:0055085

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g0335	Lele-ChrLele11	3398122	3408127	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g0335	1	258	Antiporters	AT5G13490	62.975	4.22e-110	330

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele11g0335	11	3398122	3408127	Lele12g0958	12	17311648	17313482	ECH
	Lele11g0335	11	3398122	3408127	Lele11g0335	11	3398122	3408127	ECH
	Lele09g0337	09	2395023	2399214	Lele11g0335	11	3398122	3408127	hybridization
	Lele10g0321	10	2149373	2151206	Lele11g0335	11	3398122	3408127	hybridization

Showing 1 to 4 of 4 entries