Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0335 ATGCCAGCGTGCAGTATTGCTGCAACAACAGGCTCGCCAATCTTTGTGGCTGCTCCAGCTGAGAAAAGACATTTCCTTGTGGACTTTCTCTTGGGTGGAGTTTCAGTTGCTGTATCAAAAACTGCTGCTGCTCCCATTGACCGTGTCAAACTTCTGACACAGAACCAAGATGAGATGATTAAAGCCGGTAGGCTCTCTGAGCCCTATAAGGGTATTGGTGATTGTTTTAACCGAACAATTCAATCTGAAGGCGCTGTTTCCCTTTGGAGAGGAGCGGAACTTTGCTTTGAAGGACTGCTTTTTAATTTCAAGAAGGACAAGGATGGTTACGGGAGATGGTTTGTAGGCAACTTGGCCTCTGGAGGAGCTGCGGGTGCTTCATCTCTGTTGTTTGTTTACTCCCTCGACTATGCTCGAACCCGTCTCCCAAATGATGCAAAGGCCGCGAAGAAGGGTGGAGGAGAAAGGCAATTCAATGGGCTTGTTGATGTCTACAAGAAGACCTTGGCTTCTGATGGTATTGCTGGCCTTTACCGTGGTTTCAACATCTCATGCGTTGGAATCATTGTGTATCTTTATTTTAGAATGTATGATTCCCTGAAGCCAGTGCTCTTGACTGGAAAGTTACAGTCAAGTACAAGAGCTCCATGGATGCATTTTACTCAAATTCTCAAGAATGAAGGCTATAAGTCCCTGTTAAAGGGAGCAGGTGCTAACATCCTCCTTGCCGTTGCCGGAGCCGGTGTACTCGCCGGTTATGACAAGCCACAGATTAAGATGAATGATGGTAGACCAATGGAGCTGCATTACATAAACCCTGGTTTTCAATCTACTACAACCGAAAGCTTCATGGAGTTCTTCGACGGACCGCCAGTGGATTATGATCACGCTGGTCCAATTCCTTATCAGGAATACTGGTCAATGAACATGAACCCTTACAAGTTTGTATTGTCTGGTCCGGATAGTGCATCTTATTATGGTTCTTACGAAGAAGATAATAGTTTCCCAAGACTGGAGGTCGACAGGGGAGAGTGGGAATATCCTTTCACAACGACCACTGAGGAGCCCACCACAACAGACTCTCCATCCAGAAGGGATGGAGTGAATGGCATGCAGACCATCCCTGAAGAATCCAGCCCAAATCGTCATGATTCCAGTAATGCTGCGGTTATATGGCAAGACAATATCGATCCAGATAATATGACTTATGAGGAATTGCTGGACTTGGGTGAGGCAGTTGGAACTCAAAGCCGAGGTCTTTCTCAAGAACTTATTGATTTACTCCCGACTTCGAAGTACAAATTTGGAAGCTTATTTAAAAGAAAAAATTTTGGGAAAAGGTGCGTCGTTTGTCAGATGACGTATAGAAGAGGTGACCAACAAATCAAATTACCGTGCAGGCATGTTTACCATGGTGAATGCATCTCTAAATGGCTTAGCATTAACAAGAAATGCCCAGTTTGCAACGTTGAGGTATTTGGTGAGGAATCAACACATTAG 1500 0.4493 MPACSIAATTGSPIFVAAPAEKRHFLVDFLLGGVSVAVSKTAAAPIDRVKLLTQNQDEMIKAGRLSEPYKGIGDCFNRTIQSEGAVSLWRGAELCFEGLLFNFKKDKDGYGRWFVGNLASGGAAGASSLLFVYSLDYARTRLPNDAKAAKKGGGERQFNGLVDVYKKTLASDGIAGLYRGFNISCVGIIVYLYFRMYDSLKPVLLTGKLQSSTRAPWMHFTQILKNEGYKSLLKGAGANILLAVAGAGVLAGYDKPQIKMNDGRPMELHYINPGFQSTTTESFMEFFDGPPVDYDHAGPIPYQEYWSMNMNPYKFVLSGPDSASYYGSYEEDNSFPRLEVDRGEWEYPFTTTTEEPTTTDSPSRRDGVNGMQTIPEESSPNRHDSSNAAVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDLLPTSKYKFGSLFKRKNFGKRCVVCQMTYRRGDQQIKLPCRHVYHGECISKWLSINKKCPVCNVEVFGEESTH 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0335 499 MobiDBLite consensus disorder prediction 351 385 - -
Lele11g0335 499 SUPERFAMILY RING/U-box 447 493 - -
Lele11g0335 499 Pfam Mitochondrial carrier protein 113 206 IPR018108 -
Lele11g0335 499 Pfam Mitochondrial carrier protein 24 92 IPR018108 -
Lele11g0335 499 SUPERFAMILY Mitochondrial carrier 23 254 IPR023395 -
Lele11g0335 499 PRINTS Adenine nucleotide translocator signature 163 176 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lele11g0335 499 PRINTS Adenine nucleotide translocator signature 69 90 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lele11g0335 499 PRINTS Adenine nucleotide translocator signature 25 37 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lele11g0335 499 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 220 260 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lele11g0335 499 PRINTS Mitochondrial carrier protein signature 41 55 IPR002067 GO:0055085
Lele11g0335 499 PRINTS Mitochondrial carrier protein signature 178 196 IPR002067 GO:0055085
Lele11g0335 499 PRINTS Mitochondrial carrier protein signature 28 41 IPR002067 GO:0055085
Lele11g0335 499 PRINTS Mitochondrial carrier protein signature 127 145 IPR002067 GO:0055085
Lele11g0335 499 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 203 IPR018108 -
Lele11g0335 499 Pfam Ring finger domain 447 489 IPR001841 -
Lele11g0335 499 FunFam E3 ubiquitin ligase BIG BROTHER 410 493 - -
Lele11g0335 499 Gene3D Mitochondrial carrier domain 18 260 IPR023395 -
Lele11g0335 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 493 IPR013083 -
Lele11g0335 499 ProSiteProfiles Solute carrier (Solcar) repeat profile. 23 110 IPR018108 -
Lele11g0335 499 SMART ring_2 448 488 IPR001841 -
Lele11g0335 499 ProSiteProfiles Zinc finger RING-type profile. 448 489 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0335 Lele-ChrLele11 3398122 3408127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0335 1 258 Antiporters AT5G13490 62.975 4.22e-110 330
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0335 11 3398122 3408127 Lele12g0958 12 17311648 17313482 ECH
Lele11g0335 11 3398122 3408127 Lele11g0335 11 3398122 3408127 ECH
Lele09g0337 09 2395023 2399214 Lele11g0335 11 3398122 3408127 hybridization
Lele10g0321 10 2149373 2151206 Lele11g0335 11 3398122 3408127 hybridization