Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0321 ATGCTGACGTCGGTGCCACAGGCGACAAGGCCACGAATTTCAGGGTTTTCGGCAAGAAAGCAGGTCATGGAGGCTGCGGTCGTCGACGCTGGCTCAAAGCTCCTCAAAGCGGGATTCGCTATCCCCGATCAGGCTCCAGCTATGATCATTCCTACCCAGATGAAACGCATGCCTGATGATGGATCAGTGACTGATAATTCATTAGTTGATGATGTTACCATCGATCCAATTGTGAGAGGGTTTGTCAGTGATTGGGATGCAATGGAGGATTTGTTGCACCATGTTTTATATACTGGCCTGGGATGGGAAATTGGCAATGAAGGGCAAATTCTATTTACAGATCCTCTTTGTACGCCAAAGGCTAATAAAGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGCTTTTATGCCTCAGAACAAGCAGTGCTCTCGCTATATGCTGTGGGACGTATCTCAGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATTGCACCCGTAATTGAGGGTGCTGTTCATCACATTGCGTCAAAAAGATTTGAGTTTGGAGGCGTTGATTTAACAAATTTCTTGGCCCAAGAACTCGGGAAGTCAAATCCGCTTGTAAGCATCAGCTTGTCTGAAGTTGAGAAAATAAAAGAGCAATACTCATGTTGTGCTGAAGATGAATTAGCTTATCAGAAGACCCAGGATTCTTGTGTTCCAGAGAAACATACCCTGCCTGATGGACAGGTGATAACTATTGGGAGGGAAAGATATACTGTTGGCGAAGCGTTATTCCAGCCATCTCTATTGGGTTTAGAGACACATGGAATCGTCGAACAGCTTGTACGAACTATTTCAACTGTGTCATCAGATAATCACCGGCAACTGCTGGAAAATACTGTGGTTTGTGGTGGCCCTTCTAGTATGACTGGTTTTGAAGAAAGGTTTCAGAAGGAAGCTAACCTGACTTCATCTGCTATTCGACCCACTCTCGTTAAGCCTCCAGAATACATGCCAGAAAATCTAACCACATATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTCCCACAAAATCAGCACGTTACTAAGGCGGACTACGACGAAACCGGACCATCCATCGTTCACCGGAAATGTTTCTGA 1152 0.4462 MLTSVPQATRPRISGFSARKQVMEAAVVDAGSKLLKAGFAIPDQAPAMIIPTQMKRMPDDGSVTDNSLVDDVTIDPIVRGFVSDWDAMEDLLHHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASKRFEFGGVDLTNFLAQELGKSNPLVSISLSEVEKIKEQYSCCAEDELAYQKTQDSCVPEKHTLPDGQVITIGRERYTVGEALFQPSLLGLETHGIVEQLVRTISTVSSDNHRQLLENTVVCGGPSSMTGFEERFQKEANLTSSAIRPTLVKPPEYMPENLTTYSAWVGGAILAKVVFPQNQHVTKADYDETGPSIVHRKCF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0321 383 Gene3D - 27 377 - -
Lele11g0321 383 PANTHER ACTIN 26 376 IPR004000 -
Lele11g0321 383 FunFam Actin-related protein 7 187 274 - -
Lele11g0321 383 Pfam Actin 23 383 IPR004000 -
Lele11g0321 383 SUPERFAMILY Actin-like ATPase domain 24 160 IPR043129 -
Lele11g0321 383 Gene3D Actin; Chain A, domain 4 187 274 - -
Lele11g0321 383 SMART actin_3 23 383 IPR004000 -
Lele11g0321 383 SUPERFAMILY Actin-like ATPase domain 153 383 IPR043129 -
Lele11g0321 383 CDD NBD_sugar-kinase_HSP70_actin 26 188 - -
Lele11g0321 383 Gene3D - 145 346 - -
Lele11g0321 383 PRINTS Actin signature 122 135 IPR004000 -
Lele11g0321 383 PRINTS Actin signature 45 54 IPR004000 -
Lele11g0321 383 PRINTS Actin signature 147 166 IPR004000 -
Lele11g0321 383 PRINTS Actin signature 239 255 IPR004000 -
Lele11g0321 383 FunFam Actin-related protein 7 26 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0321 Lele-ChrLele11 3296648 3302226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0321 27 383 Cytoskeleton Gene Families AT3G18780 38.462 7.61e-73 230
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0321 11 3296648 3302226 Lele11g0321 11 3296648 3302226 ECH
Lele09g0323 09 2274838 2278989 Lele11g0321 11 3296648 3302226 hybridization
Lele10g0313 10 2065689 2069824 Lele11g0321 11 3296648 3302226 hybridization