Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0274 ATGGTCACCGCAAGACCTCTCAAAACCGTCCAGTTGGTGACACCTAACCTGGTGTTTGAGGTGCTTAAAGTCCAAAATAATCCCACCCTTGCCTCTAAGTTTTTCCATTGGGCAGGGAAGCAGAAGGGTTACAATCACAATTATGCCTCCTACAATGCATTTGCTTATTGCTTAAATCGTAACAATCAGTTTCGGGCGGCAGATCAGCTTCCTGAACTGATGGATTCACAGGGGAAGCCACCTAGTGAGAAGCAGTTCGAGATATTAATCATAATGCATTCAGATGCCAATAGGGGTTTTAGGTCAAAAACAGACCAATTGGATTTGGCATTATCAGTTTATGATGATTTTAGAGAAGATGGTTTGGTTGAAGAGTCTATTACTTTTATTATTTTGATAAAAGGATTGTGTAAGGTGGGGAGGATCGATGAAATGTTGGAGATTTTGAATCGAATGAGGACCAACTTGTGTAAGCCAGATGTATTTGCATACACTGCTATGGTTCGTGTGCTGGTTTCAGAGGGCAATTTAGATGGGTGTTTGAGGGTTTGGGATGAAATGAAGAGGGATGGGGTTGAGCCTGATGTCATGGCTTATTCAACATTAATTACAGGTTTATCTAAAGGGGGCAGAACTGAAGATGGTTATGAATTATTCAAGGAGATGAAGAAAAAGGACCATTTGATTGATAGAGCAATATATGGAGCACTCATTGAGTCATTCGTGGCAAGGATGGAGGTTGGCTCTGCTTGTGATTTGTTGAAGGATTTGATAGCTTCAGGATATAGGGCCGATTTGGGGATATATAATTCACTTATTGAAGTTGCTCAAGCAAAAGAAGAACTTGGGTTACCAGTTCTTGATGACCTGTCCAAATTCTTTGCCTCTTTCATAGAGAAGAAGGGACCATTTGCGGCACTAGATACATTTACAGATCTGAAAGCAAAAGGTTATATTAGTGTCAAAATATACAGCATTCTTATGGATTCTCTGCAAAAGATTGGTCAGGCCAAGAGGGCATTATCACTCTTTGATGAAATGAATGGCTCAACATGTACACCTAATTCATCTACATACAGTATAGCAATTACATGTTTTGTTGAACTTGGGGAAATTCCAGAGGCATGTGAATGTCACAATAAGATCATTGAGATGTCTTCTATTCCGTCTGTTGCTGCTTACAGTTGTCTTTCCAAAGGGCTTTGCAAAATTGGAGAGATCGATGCAGCCATGATGCTTGTTCACGACTGCTTAGCCAATGTTGATAGTGGAACGATGGAGTTTAAGTATACTCTTACCATTCTTCGTGCATGCAAGTGA 1320 0.4038 MVTARPLKTVQLVTPNLVFEVLKVQNNPTLASKFFHWAGKQKGYNHNYASYNAFAYCLNRNNQFRAADQLPELMDSQGKPPSEKQFEILIIMHSDANRGFRSKTDQLDLALSVYDDFREDGLVEESITFIILIKGLCKVGRIDEMLEILNRMRTNLCKPDVFAYTAMVRVLVSEGNLDGCLRVWDEMKRDGVEPDVMAYSTLITGLSKGGRTEDGYELFKEMKKKDHLIDRAIYGALIESFVARMEVGSACDLLKDLIASGYRADLGIYNSLIEVAQAKEELGLPVLDDLSKFFASFIEKKGPFAALDTFTDLKAKGYISVKIYSILMDSLQKIGQAKRALSLFDEMNGSTCTPNSSTYSIAITCFVELGEIPEACECHNKIIEMSSIPSVAAYSCLSKGLCKIGEIDAAMMLVHDCLANVDSGTMEFKYTLTILRACK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0274 439 PANTHER ATPASE EXPRESSION PROTEIN 3 21 417 - -
Lele11g0274 439 Pfam PPR repeat family 321 366 IPR002885 -
Lele11g0274 439 Pfam PPR repeat family 159 208 IPR002885 -
Lele11g0274 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Lele11g0274 439 Gene3D Tetratricopeptide repeat domain 157 299 IPR011990 GO:0005515
Lele11g0274 439 Gene3D Tetratricopeptide repeat domain 300 432 IPR011990 GO:0005515
Lele11g0274 439 Gene3D Tetratricopeptide repeat domain 5 155 IPR011990 GO:0005515
Lele11g0274 439 SUPERFAMILY TPR-like 323 419 IPR011990 GO:0005515
Lele11g0274 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Lele11g0274 439 TIGRFAM PPR: pentatricopeptide repeat domain 163 196 IPR002885 -
Lele11g0274 439 TIGRFAM PPR: pentatricopeptide repeat domain 127 161 IPR002885 -
Lele11g0274 439 TIGRFAM PPR: pentatricopeptide repeat domain 323 355 IPR002885 -
Lele11g0274 439 TIGRFAM PPR: pentatricopeptide repeat domain 198 230 IPR002885 -
Lele11g0274 439 Pfam PPR repeat 126 153 IPR002885 -
Lele11g0274 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Lele11g0274 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0274 Lele-ChrLele11 2901497 2903293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0274 110 439 Glycosyltransferase AT1G05670 26.866 2.32e-25 107
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0274 10 1809756 1815063 Lele11g0274 11 2901497 2903293 hybridization