Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0240 ATGTCTTTACATCAGCATAATCATGGTGAGCTCCATGGTGTTTCAGGGTCAGGATGTTGCCTTTATGATCTTTTGTGTGCTGAAACTCCAAATTTTCAATCCCAAAAGAATCAGCGGCCGCCTTCATGTCCTCTTGAAAGGTTAGAGAAGTTGATCCATGAAGCCGGGAACAAGTATTGCGCCGATTGCGGGTCTCCAGAGCCAAAATGGGTATCTTCAAATATTGGAGCATTTATTTGCATAAAGTGTTCTGGCATACATAGAAGCCTAGGAGTCCATATATCAAAGGTTTTATCATTGAAGCTAGATCAATGGACAGATGATGAAGTTACTGCACTAGCAAAGTTGGGAGGGAATATATCAGTAAATGAAAAGTATGAAGCTTTCATCCCTAGTTTTATAAAAAAGCCAAAGCCGACTTCTTCCATCGATGAGCGTGCTGACTTTATCAGGAGAAAATATGAGTGGCTTCAATTTATGGAGTGTGATGAACAGCTGTCCTGCCCCTTTATACCACAACAGAGCAGTTCCTCATTCATCATGTCTCCTCTAGACAAGAAAAATTGTAATAAACCAGCAACCAAACATCGTATAGGGAGTACATTTCGTAACAGCTGGGGAAGAAAGGAGCCCGATAATAATAATAACAACTCTTCAAAGAAGAGCAATTCATTGGCAGGCATGGTGGAATTTGTTGGGTTGGTAAAGGTTAATGTGGTCAAAGGCACTAACCTGGTTATCCGGGATGTAATGACTAGTGATCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAGGACACGAGTTATAAAGAACAATTTAAATCCTATCTGGAATGAGAGCCTAATGTTGTCAATTCCACACAACATTCCTCCTCTTAAAGTGCATGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGGGGCCGAAATAGACATCCAACCCCTACTCATGGCTGCAAAAGCCTATGAGAAATGTAGAGCCAATGAACCCATAGAGTTTGAAAAATTGGTGGCGAGTTTGGACAACTCCCTCGTTAAAGATGGCGTCATCTCTCTCAAAGACGGGAATATCAGACAGGAAATATCCGTAAAGCTGCAGCATGTGGAGAGAGGGGAGCTGGATTTTGAGCTTGAGTGTCTTCCTCTCACTCAATAG 1170 0.4162 MSLHQHNHGELHGVSGSGCCLYDLLCAETPNFQSQKNQRPPSCPLERLEKLIHEAGNKYCADCGSPEPKWVSSNIGAFICIKCSGIHRSLGVHISKVLSLKLDQWTDDEVTALAKLGGNISVNEKYEAFIPSFIKKPKPTSSIDERADFIRRKYEWLQFMECDEQLSCPFIPQQSSSSFIMSPLDKKNCNKPATKHRIGSTFRNSWGRKEPDNNNNNSSKKSNSLAGMVEFVGLVKVNVVKGTNLVIRDVMTSDPYVILSLGHQSVRTRVIKNNLNPIWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGGAEIDIQPLLMAAKAYEKCRANEPIEFEKLVASLDNSLVKDGVISLKDGNIRQEISVKLQHVERGELDFELECLPLTQ 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0240 389 ProSiteProfiles ARF GTPase-activating proteins domain profile. 46 167 IPR001164 GO:0005096
Lele11g0240 389 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 37 389 IPR044518 GO:0005096|GO:0005543
Lele11g0240 389 MobiDBLite consensus disorder prediction 201 222 - -
Lele11g0240 389 FunFam stromal membrane-associated protein 1 isoform X1 30 165 - -
Lele11g0240 389 SMART arf_gap_3 45 167 IPR001164 GO:0005096
Lele11g0240 389 CDD ArfGap 48 154 - -
Lele11g0240 389 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 230 324 IPR035892 -
Lele11g0240 389 CDD C2_ArfGAP 232 376 - -
Lele11g0240 389 Gene3D C2 domain 231 389 IPR035892 -
Lele11g0240 389 ProSiteProfiles C2 domain profile. 216 331 IPR000008 -
Lele11g0240 389 Gene3D Arf GTPase activating protein 29 167 IPR038508 -
Lele11g0240 389 PRINTS HIV Rev interacting protein signature 76 93 IPR001164 GO:0005096
Lele11g0240 389 PRINTS HIV Rev interacting protein signature 97 118 IPR001164 GO:0005096
Lele11g0240 389 PRINTS HIV Rev interacting protein signature 57 76 IPR001164 GO:0005096
Lele11g0240 389 SUPERFAMILY ArfGap/RecO-like zinc finger 47 160 IPR037278 -
Lele11g0240 389 SMART C2_3c 234 329 IPR000008 -
Lele11g0240 389 Pfam Putative GTPase activating protein for Arf 47 160 IPR001164 GO:0005096
Lele11g0240 389 Pfam C2 domain 234 322 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0240 Lele-ChrLele11 2701278 2704521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0240 41 389 C2H2 Transcription Factor Family AT4G21160 47.278 9.26e-117 341