Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0234 ATGCTTTCTACAGGAAAAGAGCGGAAGCCTGATAATTCCAGGATAGTACCGTGGAATGGCTCTTGGAGATCTGGAATTTCGGAGTTATCTGACGACATTTTAACTAAAATTCTAGCTCCCCTAGGGTCAATGGACATTGCTAGGGTTTCTGCAACTTGTCATGATCTGAGATTCTTGGCTGCTTCAATAATGCCTTGTACGAAGTTAAAACTGTTTCCTCACCAGCAGACTGCTGTTGAGTGGATGTTGCATCGGGAGCGAAATGCTGAACGCTTGGCACATCCTTTGTATGTTTATTTTTCAACAGAGGATGGCTTTGTTTTCCATATAAATACTGTATCTGGTGAAATAGCCATTGGGCGAGCTCCCACCATTAAAGACTTTTGTGGTGGAATGTTCTGTGATGAGCCTAGTTTGGGTAATACTGTAACAACTCTTTCTCTTAAACTGAAGGCACAGGGTACCTTGGCAGATCCACCAGATGGAGCAAAGGTGGTATGGAGTCACCATAATGGTAATATTAAATGTGGTTATTATGATATTGTTGGTAGTTACCTAATTGACAGTAGTAATTTGGGGAAGAAGGACAAATGCCAGGATGCTAGGAATAATGAGCTCCATGATTACTCCTCCAAAAGAGCTAGATTGAAGGTTCCTGCTGAGAAAACCAATGGACTTAATAATAAATGTTCTGGTGAAGAAAAAAATTCACCTGTAGGAAGCTGGGCATTCCAAAGAAAGAAAAGATATGTAAGCTCTATGAAACTAGAACACGCATCAAATGTTGAAGCACGTGTATCAGAAAATAAACCAGATGATACTTCATATGGACATGAAAAGGGTTGCAAGGGACCTAAGAAGCCTACAGTGGATTCTTTTGAGTACAATGACACTTGTATTCAGTGTGATGCTTGCCAGAAATGGAAAAAGCTCGCAGATGCCAGTATGGCTAACACTAATGCAGCATGGTTTTGTAGTATGAACACTGATCCTTTGTATCAGAGTTGTAGCATCCCAGAACAACCCTGGCATAATAGCTGTGAAATAACTTATTTACCAGGATTTCATGTGAAAGGTGGTCCAGGGTGTGAGAAGAAGAATGTTTCATTTTTCACTGGTGTACTTAAGGAGCACCACACAATTATAAATTCTGAGACAAAGAAAGCCCTGACTTGGTTGGCTAGACTTCCTCCTGACAATCTTTCCAGAATGGAAATAAACGGCATAAGGGGTCCTGTTTTAAGCACCTGCACTGTGTCCAGTGGATATCTTAATCCATACCACAAGATATTTCAAGCATTTGGTCTCATTAAGAGAATAGAAAAAGGTGTAACCGAGTGGTACAACCCACGAAATCTAAATAATCATTTGGCTTTTGATGTAACTGCTCTCGGCAGTGCTCTGCGTGAACCATTAGATTCATTTAGGCTATACTTGTCAAGAGCAACCCTTATAGTTGTTACTGGTAACTTGGTTGATCACTGGAAAACTCAAATAGAAAAGCATGTCAAACATAGTCAATTGCGGGTTTATGTTTGGAATGATACTTGGAAGTGGAAGCCATCTGTGCACAGTCTGGCATGGGGTTATGATGTTGTCATTCCTACATTTAGTCGATTGAGTGCAGAGTGGATCCCACGTAAGAAAAGTGTTCTGATGCAAGTCCATTGGCTGAGGATCATATTTGATGAAGGGCACACTCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGACAGCTTCAAATCGTTGGATACTAACAGGAACACCAACACCTAACACACCTAAAATTCAACTATTGCATTTACAAACATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGGCTGAATCCAAAGTCACGGGAAGTTGGCATCCTTAAGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTTTCGTCTGTTGCATCTACTTCGTAACTGCATGATTAGTGCGAGGAAGACAGACTTGCAGAATATTCCCCCATGTATCAAGAAAGCTGTTTTTCTAGATTTTACTGAGGATCATGCCAGAAGTTATAATGAGTTGGTATTAACAGTTCGTCGTAATATATTAATGGCTGATTGGAATGATCATTCACATATTGAGAGTCTACTGAATCCAAAACAATGGAAATTTAGGGTTGCAACTATAAAAAACATCAGGCTCTCATGCTGTGTTGCCGGACATATTAAAGTTACGCACGCTGGTGAAGATATTCAGGAAACGATGGATATGTTAGTAGGAAGTGGTATGGATCCTGATTTAGCTGAGTATTCCTCTATTAGATATAATCTGCTTTGTGGTCGGTGTGTGCAAGGAATGGTGTCGCCTTCCCTTTATCACACCATGTCGGCATCTGTTGCCTTGACTGATGATTGGGATCCTGAGCCTGATTGGCAATCGACATCTAGTAGCAATGTATCTTATCTTGTCCAGAGATTGAAAGCTTTACAAGAATCCAATAAGGAGAAGAGCTACTATAATAGCAATGATCAGTTGACTATTGCTGGTATTAAATATACTGGGATGTATAGTCCAATGCCTTTAAGCAACAAGAAGAAGTCATTGACCACATTTCAGCATGATCCCGATTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTTTTGCCCACGTGTTTTTAATGGAACCAATCTGGGATAGAAGGAACAAGTCATTAGTCGTGCTCATCGCATGGGGTGCTTGTCGTCCCATTCATGTGGAAACATTAGCAATGTGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAGAAGCAGAAGCTCCCCTAGTGAACCTGTTGTTCAATCTGATGATGGTAGAGAATTCCCAACTAAAGGTGTTATCCAATTTGAAGAAGGGCGACGAGGACGTTCTTTTCATGATTTTGCAGAAAATAGGTATCTACTGAAACTTGGATTTGTGAACACCAATCCTAATGCCGTAGAAGGTGTTTGA 3009 0.4068 MLSTGKERKPDNSRIVPWNGSWRSGISELSDDILTKILAPLGSMDIARVSATCHDLRFLAASIMPCTKLKLFPHQQTAVEWMLHRERNAERLAHPLYVYFSTEDGFVFHINTVSGEIAIGRAPTIKDFCGGMFCDEPSLGNTVTTLSLKLKAQGTLADPPDGAKVVWSHHNGNIKCGYYDIVGSYLIDSSNLGKKDKCQDARNNELHDYSSKRARLKVPAEKTNGLNNKCSGEEKNSPVGSWAFQRKKRYVSSMKLEHASNVEARVSENKPDDTSYGHEKGCKGPKKPTVDSFEYNDTCIQCDACQKWKKLADASMANTNAAWFCSMNTDPLYQSCSIPEQPWHNSCEITYLPGFHVKGGPGCEKKNVSFFTGVLKEHHTIINSETKKALTWLARLPPDNLSRMEINGIRGPVLSTCTVSSGYLNPYHKIFQAFGLIKRIEKGVTEWYNPRNLNNHLAFDVTALGSALREPLDSFRLYLSRATLIVVTGNLVDHWKTQIEKHVKHSQLRVYVWNDTWKWKPSVHSLAWGYDVVIPTFSRLSAEWIPRKKSVLMQVHWLRIIFDEGHTLGSSLNLTNKLQMAISLTASNRWILTGTPTPNTPKIQLLHLQTLLRFLHEEAYGLNPKSREVGILKPFEAEMEEGRFRLLHLLRNCMISARKTDLQNIPPCIKKAVFLDFTEDHARSYNELVLTVRRNILMADWNDHSHIESLLNPKQWKFRVATIKNIRLSCCVAGHIKVTHAGEDIQETMDMLVGSGMDPDLAEYSSIRYNLLCGRCVQGMVSPSLYHTMSASVALTDDWDPEPDWQSTSSSNVSYLVQRLKALQESNKEKSYYNSNDQLTIAGIKYTGMYSPMPLSNKKKSLTTFQHDPDCMALVMDGSAALGLDLSFFAHVFLMEPIWDRRNKSLVVLIAWGACRPIHVETLAMCGTIEEQMLEFLQDADRSRSSPSEPVVQSDDGREFPTKGVIQFEEGRRGRSFHDFAENRYLLKLGFVNTNPNAVEGV 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0234 1002 MobiDBLite consensus disorder prediction 939 959 - -
Lele11g0234 1002 ProSiteProfiles Zinc finger CW-type profile. 287 344 IPR011124 GO:0008270
Lele11g0234 1002 Gene3D - 285 346 - -
Lele11g0234 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 638 IPR027417 -
Lele11g0234 1002 Gene3D - 801 959 IPR027417 -
Lele11g0234 1002 SMART ultradead3 67 630 IPR014001 -
Lele11g0234 1002 CDD DEXDc_SHPRH-like 469 655 - -
Lele11g0234 1002 SUPERFAMILY F-box domain 23 62 IPR036047 GO:0005515
Lele11g0234 1002 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 62 939 - -
Lele11g0234 1002 Pfam SNF2-related domain 74 713 IPR000330 GO:0005524|GO:0140658
Lele11g0234 1002 Pfam CW-type Zinc Finger 299 341 IPR011124 GO:0008270
Lele11g0234 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 939 IPR027417 -
Lele11g0234 1002 MobiDBLite consensus disorder prediction 263 285 - -
Lele11g0234 1002 Gene3D - 462 659 IPR038718 -
Lele11g0234 1002 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 447 614 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0234 Lele-ChrLele11 2668922 2673761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0234 482 688 RAD5 or RAD16-like Gene Family AT5G22750 31.797 3.01e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele11g0234 SNF2_N 8.8e-85 CL0023