Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0188 ATGGCTACTTCTAGAACTGTCAAGGACGTCTCGCCTCACGAGTTCGTGAAGGCTTATTCTGCTCATCTCAAGCGATCTGGCAAGATGGAGCTTCCCGAGTGGACAGATATTGTGAAGACGGCAAGATTCAAGGAGCTGGCTCCATATGATCCTGACTGGTACTATGTTAGGGCTGCCTCCATGGCTAGGAAGATCTACTTGAGAGGGGGTCTTGGTGTTGGTTCTTTCCAGAGGATTTATGGTGGGAGCCAGAGGAATGGTAGCCGCCCTCCTCATTTCTGCAAGAGCAGTGGTGCTATTGCTCGTCACATTCTTCAACAGTTGCAGAACATGAACATCATTGAAATCGACACCAAGGGTGGCAGGAAAATCACTTCAAATGGTCAGAGGGATCTTGACCAAGTGGCTGGCCGGATTGTGGTGGCCCCTTGA 432 0.5023 MATSRTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQNMNIIEIDTKGGRKITSNGQRDLDQVAGRIVVAP 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0188 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele11g0188 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Lele11g0188 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele11g0188 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lele11g0188 143 Gene3D - 1 142 IPR036388 -
Lele11g0188 143 FunFam 40S ribosomal protein S19 2 143 - -
Lele11g0188 143 PANTHER 40S RIBOSOMAL PROTEIN S19 2 139 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0188 Lele-ChrLele11 2341345 2342843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0188 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 84.507 2.83e-93 264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0190 09 1355434 1356895 Lele11g0188 11 2341345 2342843 hybridization
Lele10g0189 10 1220860 1228976 Lele11g0188 11 2341345 2342843 hybridization