Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0174 ATGAGGAAGAAGCTGGATACTCGTTTCCCTGCTGCTCGGATTAAAAAGATAATGCAAGCAGATGAAGATGTTGGGAAGATAGCCCTAGCAGTGCCTGTTTTAGTTTCTAAAGCTCTAGAGCTGTTTTTGCAAGACCTTTGTGATCGTACATATGAAACAACTCTTCAAAGAGGAGCAAAGACGATGAGTGCATTGCATTTAAAACATTGTGTACAGAGCTATAATGTCTTTGATTTTCTGAAGGATGTCGTCAGCAGGGTTCCCGACTATGGCCATGGGCATGGGCATAACCATTCTGAGACTGGCGCTGATGATCGGGTCATTCCAAGAAGAAGGAAAGCAGCAAATGATGATCACCATGATAGTGATGACGACTCTAAGAGAAGCAAGATGCATGAGGTGAGTCATAGTGGCAGTAGTGGCAGGGGAAGAGGCCGAGGTAGAGGGAGAGGGCGTGGTCGAGGGGTGCGAAATGTTGAAAGGGAAAGAGAGACTCATCATGAAGAGCTTGAAACCGAACCTTGCACTTCTGCTCTGAACAGCAGCAAACATAATCCTGATACAAATGTGGCAATTGATAATGATTCAGAGCTGAAGGAGTTACCGAAAGAGAATAATGCAATCCCTGATGAAGGCACGCAGTCTGTCCGTAACATTGATCTGAATGCCAACTTTAATGATAACGAAGACAAAAATGCTAGCACCGCGGTAACTGATGCCCCTTTGCTTGATCCTCCAAAACCTGAGACTAAGCATGAAGAAATCCCTGGCTGGTCTCTTTCTGAGGTGGACAAGATGGTCATTGACTCTATGCAGCTGGCACACCTTAGTAAACCGATGGAAGAGGATGAGGAAGATTATGATGAAGAAGGGTGA 876 0.4521 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYETTLQRGAKTMSALHLKHCVQSYNVFDFLKDVVSRVPDYGHGHGHNHSETGADDRVIPRRRKAANDDHHDSDDDSKRSKMHEVSHSGSSGRGRGRGRGRGRGRGVRNVERERETHHEELETEPCTSALNSSKHNPDTNVAIDNDSELKELPKENNAIPDEGTQSVRNIDLNANFNDNEDKNASTAVTDAPLLDPPKPETKHEEIPGWSLSEVDKMVIDSMQLAHLSKPMEEDEEDYDEEG 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0174 291 MobiDBLite consensus disorder prediction 174 191 - -
Lele11g0174 291 MobiDBLite consensus disorder prediction 91 191 - -
Lele11g0174 291 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 132 - -
Lele11g0174 291 SUPERFAMILY Histone-fold 4 91 IPR009072 GO:0046982
Lele11g0174 291 MobiDBLite consensus disorder prediction 224 257 - -
Lele11g0174 291 MobiDBLite consensus disorder prediction 153 173 - -
Lele11g0174 291 FunFam dr1-associated corepressor homolog 1 86 - -
Lele11g0174 291 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Lele11g0174 291 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Lele11g0174 291 MobiDBLite consensus disorder prediction 91 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0174 Lele-ChrLele11 2243099 2246535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0174 1 278 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.443 2.99e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele11g0174 CBFD_NFYB_HMF 1.2e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0178 09 1260746 1264195 Lele11g0174 11 2243099 2246535 hybridization
Lele10g0179 10 1164174 1167515 Lele11g0174 11 2243099 2246535 hybridization