LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g0162	ATGTTCTGTAATAAACACTATCTGTCGGGTCGGTGGAAAAATAAATTCTATGGTCTGGACAACCCGTGCTTTCCTGATCGCAGGAGATCTGCATTAATTATATTGTTTGCTGAGGCTTTGGCAGATTACATAATACTAGTACAAGGGATGAGTCGAATGATACATGACATTGAAGATGGGGAGCTCCCCAGTGATCAGAACGGACCACAGTTGAATGATGAGGGTAATGGAGGAAGTGCCAGCGGAGTTATTCTGAAGAAAGGTCCTTGGACAACTGCCGAAGATGCTATTTTGGTGGACTATGTTAAGAAGCATGGGGAAGGGAACTGGAATGCTGTTCAGAAGCACTCAGGTCTGTCCCGTTGTGGCAAAAGCTGCCGACTGCGGTGGGCAAATCACCTAAGGCCAAGTTTAAAGAAAGGAGCTTTTACTGCAGAAGAAGAGCGGTTGATTGCCGAACTCCATGCCAAGATGGGAAACAAATGGGCACGCATGGCTGCACATCTGCCTGGTCGTACTGATAATGAGATAAAGAACTACTGGAATACTCGTATAAAGAGGCGTCAGCGGGCTGGCTTGCCTCTATATCCTCCTGAAGTGTGTTTACAAGAATCCAAAGAGAGTCAACAAGGCCGAAGCACTGCTGGAAAAATTGGAGATAGAGGAAATAATGATTTTCTTCAGGAAAACAGTTATCAGAAACATGATACTCTATTTGACTGTCTGAATGCAAATCAGGGAGGCTTTCCTTATGTGCCAGAGATTCCTGACATTTGTGCTGATAACATTCTGCTGAAAGGTCTTGGTTCTTCCCAGCATTGTAATCTTTTGCCATCAACATTACCTTACCATAAGCGCTTTCATGATTCAACATTGCCATTTCTTAGTTCATCTGATGTGACCAGAAATGGGTTTTATCCTTTACACCATATTCAGGATTATACTTATGATAAGATTGCACAATCATTTGGATACCATTCTCCCCTTGATCCTGGTCCCTCATCACAGAACTCACTGTGTTATAGCCATTCGCTTTCCAATGGCAATTCCTCCTCTACTTCTAAGCCAACTTTTGAGGCTTTGAAGCTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATTTAGGCTGCTGGGGTACATCTCCTCCGCCTCCTTTGCTAGAATCAGTTGATGTTCTCACAGGTACTCCCCTGTCAACTAGTTTACTGGAGTCAGACTCTTCTTCACCATATAACAGTGGCCTCCTGGATGCTTTACTTCATCAGTCCAAGAATCTGAGCAGTTCAAAGAACCATTGTTCTGATAAGAGTTCAAATTCATCTACCACTACCCCTGGTGATAGAGCCGGCAGTTCCACTCTGTATGCGTATGAGACAGAATGTGAAGACTATGCAGACTGTGTTTCTCCGTTTGGTGCAACTTCAATATTGAATGAATGTCTTGCTGGTAGTGCCAACGGAAATTCATTTGACGAACTGCAACCTGCACAGACCTTAAATGAAAACACTCTGAAATCAGGATCTGCTTACAACGCTTTGACCCCCAACAGTAAAGATCAAGACGTGTCAATGTTGGATGTGCCCAGACCCGATGTTTTGCTTGCTTCAGATTGGTATGAGCAAGGCCCTGCATTTACCAAGAACCAGGCCAACATGAACAATTCCATAGCAACCCTCATCGGTGGTGATGATTCAGCCACCGACTACAAGTACATATCTGCGGAAATCTCATCACCTAGTCAAGTATGGGGTTTGGATTCTTGCACATGGAATTACATGCCTGCTGTTTGCCAAATGTCTGATCTTCCGTAA	1812	0.4409	MFCNKHYLSGRWKNKFYGLDNPCFPDRRRSALIILFAEALADYIILVQGMSRMIHDIEDGELPSDQNGPQLNDEGNGGSASGVILKKGPWTTAEDAILVDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPSLKKGAFTAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQESKESQQGRSTAGKIGDRGNNDFLQENSYQKHDTLFDCLNANQGGFPYVPEIPDICADNILLKGLGSSQHCNLLPSTLPYHKRFHDSTLPFLSSSDVTRNGFYPLHHIQDYTYDKIAQSFGYHSPLDPGPSSQNSLCYSHSLSNGNSSSTSKPTFEALKLELPSLQYPETDLGCWGTSPPPPLLESVDVLTGTPLSTSLLESDSSSPYNSGLLDALLHQSKNLSSSKNHCSDKSSNSSTTTPGDRAGSSTLYAYETECEDYADCVSPFGATSILNECLAGSANGNSFDELQPAQTLNENTLKSGSAYNALTPNSKDQDVSMLDVPRPDVLLASDWYEQGPAFTKNQANMNNSIATLIGGDDSATDYKYISAEISSPSQVWGLDSCTWNYMPAVCQMSDLP	603

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g0162	603	MobiDBLite	consensus disorder prediction	204	227	-	-
	Lele11g0162	603	Gene3D	-	142	188	-	-
	Lele11g0162	603	CDD	SANT	142	183	IPR001005	-
	Lele11g0162	603	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	72	559	-	-
	Lele11g0162	603	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	135	189	IPR017930	-
	Lele11g0162	603	ProSiteProfiles	Myb-like domain profile.	85	134	IPR001005	-
	Lele11g0162	603	SMART	sant	139	187	IPR001005	-
	Lele11g0162	603	SMART	sant	86	136	IPR001005	-
	Lele11g0162	603	FunFam	Transcription factor GAMYB	142	188	-	-
	Lele11g0162	603	Pfam	Myb-like DNA-binding domain	140	183	IPR001005	-
	Lele11g0162	603	Pfam	Myb-like DNA-binding domain	87	134	IPR001005	-
	Lele11g0162	603	ProSiteProfiles	Myb-like domain profile.	135	185	IPR001005	-
	Lele11g0162	603	MobiDBLite	consensus disorder prediction	427	450	-	-
	Lele11g0162	603	Gene3D	-	86	139	-	-
	Lele11g0162	603	CDD	SANT	89	134	IPR001005	-
	Lele11g0162	603	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	82	134	IPR017930	-
	Lele11g0162	603	FunFam	MYB-related transcription factor	86	139	-	-
	Lele11g0162	603	SUPERFAMILY	Homeodomain-like	86	181	IPR009057	-
	Lele11g0162	603	MobiDBLite	consensus disorder prediction	59	78	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g0162	Lele-ChrLele11	2176734	2180806	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g0162	64	603	MYB Transcription Factor Family	AT5G06100	41.472	1.65e-114	350

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele11g0162		Myb_DNA-binding	2.8e-15	CL0123