Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0160 ATGGAAGGAGGGTTAGGCCAAAACTCTGTTCCTTCATCAAGTTCTTTTGACAAGTCCGCAGTTTTGGATGTTAAACCTCTGCGATGCTTGCTACCAATTTTCCCAATGTCATCTCAAGGTCCTTCCACTGGTCAGTATCCTTCTGGGTTTGCTCCATTTTTCCCCTTTGGTGGACCTAAAGAATCTCATGCATGGACTGATCTCAATCAGCATGCTCGTCCCTCTGGAGTGACACCAGATGTTCCGATGCCTAAGCCACTCCGTTCATTCAGAAGCCCGTTAGACTCTACTCCATCAAAACATGGAGCACTGCGTGGGAGCAGGTTAAAATCATCCCAAAGAAATACCAAGAAGAGCCAAGAATCACAAAATGATTTGAGTTCTGTAGTTGGTATTTGCCCAGCCCAACAAGCTGATGGTAATCGGGAAGTGGTTAATCTTGTGCTCATGGAGTTTGATGCCCTTAGAAGAAGAATTAGCCAACTTAGAGATTCTGGGGAATATGTTTCAAGATTAACCAAGCGTGGAGATTTAAGAGCTGGCAATGTATTGATGACCGCAGGCATTCGAACAAACATGAAGAAGAGAGTAGGTGTAGTTCCTGGGGTTGAGATCGGGGACATTTTCTTTTTCAGAATGGAATTATGTGTTGTGGGGCTACATGCTCAGTCCATGGGTGGGATTGACTACATGACCATCAAGGATGGTTTTGAGGAAGAACCTCTGGCTTTAAGCATTGTTTCATCATATGAATATGATGACCATGCAGATGATGATGATGTTTTAATTTATAGTGGACAGAGTGGGAACTTTGGCAAGAAAGAAAAGTCAGTGTCTGATCAGAAGCTTCAAGGGGGTAATCTTGCTCTAGAAAGGAGTTCACGACGGCACAATGAAGTGAGAGTCATCCGGGGAATGAGAGATGCTGTTAATCCAAATGCAAAAATCTATGTGTATGATGGTCTGTACAAAATTCAAGATTCATGGATAGAAAAGGGAAAATGTGGCAGCGGTGTGTTCAAGTACAAGTTGGTGAGAATGCCCGGACAGCTTAGTGCTTTTTCTGTTTGGAAATCAATTGAGAAGTGGAAGACAGACTGTTCTTCAAGGACTGGACTAATTCTTTCAGATCTCTCTTCAGGAGCTGAGAGTATTCCTGTATCACTTGTCAATGAGGTTGACCATGAGAGATTACCTGGTGGTTTCACTTATTTTCATTCCCTTAAATATCCTAAACCATTCAGCTTAATGCAGTCTTTTAATGGATGCAACTGTACCAAACCATGTGCCCCTGGTGATCTGAATTGCTCTTAACACCCAGAGGTAGAAACAAATGCTTATGTGGATCATCAAAGTGCCGTGGTTCTTTTGATTGATAGTTTGTGTCGCAGTTGCTTACACATAAGCATGGTGTTTGGAAATGTACTCGTGACTAAGTGTGTGTTTAAGTTAGGTTTCGCTGTACTTAGTTTAGTGATGTCAACTATCTGTAACTATTATTCCAGACTCACACTAGAAATAGGAAGGCTGAATTTTTACCTGAGATGTCACTCCCACTTGCGTTCTCTTACCTTTGATCCATTTTACACGATGAGAGAAAGCTTGCAATCTGTAGAGCTGAGGCTTTTGAGAGTTAACAATATTTCAGATCAGAAGATTAGTGATGTCTACTTCAAAGACTGTTCTAAGTTGAGTGAAGCTTCCGGTAGAAGAAAAGACACTGCAATTGAGCTTCATTTAACATTGCCTAACATCAAAACCACTTCTAGCCTGGCCAAGAAAAGGAAGCGAATCGATCGTGTTCTACGTGATTATTCTTTCAAGCTTCAGAAACCTTCATCCCTTTCCTCAACAAATGAAGAATTTTCATCTTTGAAGATGATTGTATCAGGAAATAAGAAAGATGATTCAGATGTTTTCGTTTTGCCATCTATCTTAGCTGATTGTTTCCCTAGCTTTTAG 1962 0.4123 MEGGLGQNSVPSSSSFDKSAVLDVKPLRCLLPIFPMSSQGPSTGQYPSGFAPFFPFGGPKESHAWTDLNQHARPSGVTPDVPMPKPLRSFRSPLDSTPSKHGALRGSRLKSSQRNTKKSQESQNDLSSVVGICPAQQADGNREVVNLVLMEFDALRRRISQLRDSGEYVSRLTKRGDLRAGNVLMTAGIRTNMKKRVGVVPGVEIGDIFFFRMELCVVGLHAQSMGGIDYMTIKDGFEEEPLALSIVSSYEYDDHADDDDVLIYSGQSGNFGKKEKSVSDQKLQGGNLALERSSRRHNEVRVIRGMRDAVNPNAKIYVYDGLYKIQDSWIEKGKCGSGVFKYKLVRMPGQLSAFSVWKSIEKWKTDCSSRTGLILSDLSSGAESIPVSLVNEVDHERLPGGFTYFHSLKYPKPFSLMQSFNGCNCTKPCAPGDLNCSXHPEVETNAYVDHQSAVVLLIDSLCRSCLHISMVFGNVLVTKCVFKLGFAVLSLVMSTICNYYSRLTLEIGRLNFYLRCHSHLRSLTFDPFYTMRESLQSVELRLLRVNNISDQKISDVYFKDCSKLSEASGRRKDTAIELHLTLPNIKTTSSLAKKRKRIDRVLRDYSFKLQKPSSLSSTNEEFSSLKMIVSGNKKDDSDVFVLPSILADCFPSF 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0160 653 Gene3D - 181 365 IPR036987 -
Lele11g0160 653 Pfam Pre-SET motif 379 450 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele11g0160 653 SUPERFAMILY SET domain 362 436 IPR046341 -
Lele11g0160 653 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 181 365 - -
Lele11g0160 653 ProSiteProfiles YDG domain profile. 198 346 IPR003105 -
Lele11g0160 653 MobiDBLite consensus disorder prediction 62 125 - -
Lele11g0160 653 Gene3D SET domain 369 473 IPR046341 -
Lele11g0160 653 SUPERFAMILY PUA domain-like 180 368 IPR015947 -
Lele11g0160 653 SMART preset_2 375 463 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele11g0160 653 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 76 437 - -
Lele11g0160 653 SMART G9a_1 193 350 IPR003105 -
Lele11g0160 653 Pfam SAD/SRA domain 197 350 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0160 Lele-ChrLele11 2153545 2158378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0160 1 437 Su(var)3-9 homologs AT1G73100 48.918 1.50e-137 416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0164 09 1176097 1178088 Lele11g0160 11 2153545 2158378 hybridization
Lele10g0169 10 1111349 1113334 Lele11g0160 11 2153545 2158378 hybridization