Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0103 ATGTCTTCCAGGTTTATAGCAATTTCGGCTGTTTTTACAGCTTTGAGCTTTGTGGTTGTACAATTTGGCTCGGAGTTGTCATTCAGTAAACTGAAATCAGAAGGGATTATTGACAAGAATTTAATTCACCTGGATAAGGAGAATGTCAATCATGCAATTGAGTCGTTTTTGGGGTCGTACACCACCATATGGTTGCTCGCAAATTTTGTGATCAATGCATTTATCCTTCTCAATCTTTGTCTCAAGACTATATTTTTCTCTGAGTTGTATCCTACTGAAATTCGGAAGCTGGTTGAGTGTCTCATTAATTATGTCATCTACAAGGGGACATTTCTGCCAATGATAGTGCCCTCATCAATATATCAGGCAGGTCTATGGTCTTGTTGGTTGATAGTGCTATGTTCTTTAAAGATGTTTCAAACTTTGGCCAGAGATCGTTTAGAGCGACTGAATGCATCTCCCTCTGCCAGACCTTTGACTTATGGCCGTGTATATTCAGCATTATTGTTGGTTTTCTTGGTTGATTTATTTTGGATAAGGCTATGTCTGATGATATATAAAACACACCCATCCTCTATGCTTCTGTTGCTATTCTATGAGCCTCTCAGTATCGCTTGTGAGACCCTGCAGGCTATTTTGGTACATGGATTTCAATTGCTTGATATATGGCTCCATCATTCAGCATGCAATAACACCGATAGTGGAAGGTCAAAACTGTTTGACACATTAGCAGCAGGATCATTAATGGAATGGAAGTGGAGTCTTATTCGAAATTTTGGATTTTTACTAGACATTGCAACTTCTTTTACAGCTCTTGGCCATTACTTGCATATTTGGTGGCTTCATGGCATAGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAACATACGAACTCTGCTAAGTGCTCTTATAAATCGCATAAGAGCCTATATCAGGTTAAGGACAGCTTTAGGTGCACTACATGCAGCTCTTCCTGATGCAACTACTGAGGAGCTACTATCATATGATGATGAATGTGCTATTTGTAGGGAGCCCATGGCCAAGGCGAAAAAGTTAAACTGCAAACACCTTTTCCATCTTGCGTGTTTGAGATCTTGGTTAGATCAAGGATTGACAGAGATGTATACTTGTCCAACATGTCGGAAGTCACTCTTTGTTGGCCGGTCTCAAAATGAAGCAAGCTTCAATATGCAGGAAACGTCAAGTGAAGAACCACATGCACACCAAATAGGTTCAGGGCTTGATCAGCAAAACACTAATAGACATGCCATGGCTGCTGGATTATTTCCCAATCAGACACCAAATATGGAAGGCATTTCTTGGAGGGGTGCAGCTGGACTGGACTCACCTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCTGGTCCATCTACTGCAATGAGATCAGTTGGATTAGGAAGGGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAAATGCTCAGAATGCCCTTGAAGATACTGCCTGGAGCCTTTGGCCTATGAATCCTTCTCAGGCTTCTCCAAGCGGTTCACGGATTCCTCATCCTCATGGGAGGTTCCCTGGAGGCTCTGATAATCTACATATGAGGAATGCCTCACGTTTTGTAAATGATAATCTGGCAAATATACTGGCTATGGCTGAGACTGTTCGGGAGGTTCTTCCTCATATACCAGATGACATAATTTTCCAGGACTTGCAGCGGACAAATTCTGTGTCAGTTACAGTGAATAATCTTCTCCAAATGTGA 1764 0.4161 MSSRFIAISAVFTALSFVVVQFGSELSFSKLKSEGIIDKNLIHLDKENVNHAIESFLGSYTTIWLLANFVINAFILLNLCLKTIFFSELYPTEIRKLVECLINYVIYKGTFLPMIVPSSIYQAGLWSCWLIVLCSLKMFQTLARDRLERLNASPSARPLTYGRVYSALLLVFLVDLFWIRLCLMIYKTHPSSMLLLLFYEPLSIACETLQAILVHGFQLLDIWLHHSACNNTDSGRSKLFDTLAAGSLMEWKWSLIRNFGFLLDIATSFTALGHYLHIWWLHGIAFHLVDAVLFLNIRTLLSALINRIRAYIRLRTALGALHAALPDATTEELLSYDDECAICREPMAKAKKLNCKHLFHLACLRSWLDQGLTEMYTCPTCRKSLFVGRSQNEASFNMQETSSEEPHAHQIGSGLDQQNTNRHAMAAGLFPNQTPNMEGISWRGAAGLDSPWLHSWPNQGVDGAGPSTAMRSVGLGRVQMMMRHLASVGENAQNALEDTAWSLWPMNPSQASPSGSRIPHPHGRFPGGSDNLHMRNASRFVNDNLANILAMAETVREVLPHIPDDIIFQDLQRTNSVSVTVNNLLQM 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0103 587 Gene3D - 546 586 - -
Lele11g0103 587 ProSiteProfiles Zinc finger RING-type profile. 340 382 IPR001841 -
Lele11g0103 587 CDD CUE_RIN3_plant 548 585 IPR035667 -
Lele11g0103 587 SUPERFAMILY RING/U-box 326 388 - -
Lele11g0103 587 Pfam Ring finger domain 338 382 IPR001841 -
Lele11g0103 587 SMART ring_2 340 381 IPR001841 -
Lele11g0103 587 Pfam CUE domain 551 587 IPR003892 GO:0043130
Lele11g0103 587 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 48 587 - -
Lele11g0103 587 FunFam E3 ubiquitin protein ligase RIN2 546 586 - -
Lele11g0103 587 MobiDBLite consensus disorder prediction 396 415 - -
Lele11g0103 587 FunFam E3 ubiquitin protein ligase RIN2 313 392 - -
Lele11g0103 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 392 IPR013083 -
Lele11g0103 587 ProSiteProfiles CUE domain profile. 547 587 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0103 Lele-ChrLele11 1761283 1766626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0103 49 423 C3H Transcription Factor Family AT3G16090 26.034 4.88e-29 119