Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0084 ATGCAGAGGAGAAAAAAGAGCAAAAATGGTAGCAAGATCTGCATGATTTGCCAAAGGTGCTTTGCTAACGGAAAAGCTAGGGGAGGGCATATGAGGTCTCACTTTGCGAAACTTCCCATCCCTGCTAAGCTTGCTCCAGTACCTCCAATTGCAGATCACGTGCCATCGGAAATATCCAAAGTTGATGTTGATGGTGGTTCATCTTCAACCCATAAGCGTTCGATCTCCTTTTCTTCACCAAAAAGTCATCTGATGAAGAAATCGCCTGCTGAACAGAGCTTTCACTCCATGAATCAAGACTTTGCAGCAAGAGTTTCAAACCCCAGCGATGACCAAGGAAGCAGATCAGATCAATCTTACATGTCTGGAAGGAGGTCTAAACGTTGCCGTAAAATCGATGATGTAACAAGAGCATTAATGTTGCCGTCTAACACAAAACTTGATGAAGATGATAATCCAAACCAAACATGTTCGATCTTTCATTCTTACTTTCTGGCTAGAGATGCTGCTTTGACTCTCATATTGCTTTCCAAGGCTAAATGCCCTGAAGGCAGAGAATTGATCAAGAAGAAACAAAAAGTGAAGGATGCGAACGAACAAGAAGACTCATACGTGGAGGTTCACTCTCATGGCGGGAGGTTCGTGTGCGAGATGTGCAAGAAAGTTTTCGGATCTTACCAAGCACTTGGTGGGCACAAAGCAAGCCACAAAAAATTCATCAAGAATTATCAACTTGTGTTAGATGGTGAATTTGATGAAGAAAATGGGGATGATGGTAACAAGGGGAACGATGATGATGTTCTTGAAGATCCAAAAGTAGTGTTGAAGTGCCCCCACTGCTTCAGAGTGTTTGGGTCCAGCCAAGGACTTGGAAGACACAAGAAGATACACACTCCAAATGCTATGAAATTTGGGGACAATGACATAGATCTTAACTCGCCTGCTCCAGTGGAAGATTATTGA 963 0.4299 MQRRKKSKNGSKICMICQRCFANGKARGGHMRSHFAKLPIPAKLAPVPPIADHVPSEISKVDVDGGSSSTHKRSISFSSPKSHLMKKSPAEQSFHSMNQDFAARVSNPSDDQGSRSDQSYMSGRRSKRCRKIDDVTRALMLPSNTKLDEDDNPNQTCSIFHSYFLARDAALTLILLSKAKCPEGRELIKKKQKVKDANEQEDSYVEVHSHGGRFVCEMCKKVFGSYQALGGHKASHKKFIKNYQLVLDGEFDEENGDDGNKGNDDDVLEDPKVVLKCPHCFRVFGSSQGLGRHKKIHTPNAMKFGDNDIDLNSPAPVEDY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0084 320 MobiDBLite consensus disorder prediction 61 127 - -
Lele11g0084 320 MobiDBLite consensus disorder prediction 62 120 - -
Lele11g0084 320 Gene3D Classic Zinc Finger 182 304 - -
Lele11g0084 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 236 IPR013087 -
Lele11g0084 320 SMART c2h2final6 12 34 IPR013087 -
Lele11g0084 320 SMART c2h2final6 275 297 IPR013087 -
Lele11g0084 320 SMART c2h2final6 214 236 IPR013087 -
Lele11g0084 320 Pfam C2H2-type zinc finger 213 238 - -
Lele11g0084 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 275 302 IPR013087 -
Lele11g0084 320 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 12 319 IPR044303 GO:0006355
Lele11g0084 320 ProSitePatterns Zinc finger C2H2 type domain signature. 277 297 IPR013087 -
Lele11g0084 320 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Lele11g0084 320 Pfam C2H2-type zinc finger 276 297 - -
Lele11g0084 320 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0084 Lele-ChrLele11 1615349 1616311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0084 14 319 C2H2 Transcription Factor Family AT3G60580 27.187 3.34e-22 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele11g0084 zf-C2H2_6 1.2e-10 CL0361