Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0032 ATGTTAGTTGATGAAGTTGCTCCAAATGAAGCTACATTTACAAGTGCAGCCAGGCTTGCTGCTGCAAGGGATGATCCTGAAATGGCTTTTGAATTGCTAAAGCGAATGAAAAGTTGCGGTATGTTGAGATCATACGAACCTTCCCTTTTTGGATTCTGCAAGAGGGGGGATACAAATAAAGCTTATGAAGTTGATGCTGACATGATTGCTTCCGGGATTATGGCTGAAGAGCCTGAGCTTTCTGCTCTTCTAAAACTCAGCGTTGATGCAAAAAAGGAAGACAAGGTCTATGAAATGTTGCATCGTTTACGTGCCACTGTGAGGCAGGTGTCAGAATCAACTCTTCAAATTATTGAAGATTGGTTCAACTCTGAAGATGCGGCAAAAGTTGGAGAAAAATATTGGGATGTTAGCATGGTAAGAAAAGGGATCGTTCAGGGTGTTGGGGGATGGCATGGGAAAGGATGGCTTGGAAGTGGGCAATGGAAGGTGGTGAAGACTCATATAAATGATGCTGGTATGTGTCTCTCATGCAATGAAAAGCTAGTGAGCATTGATATCGATCCAAAAGAGACTGAAAATTTTGCCACCTCATTAACTAGATGGGCTTGTCAACGAGAAGCTAAGGCAAACTTTAACCATTTTCAGAAGTGGCTTCAGCAACGAGGTCTTTTTGATGCAGTTGTAGATGGTGCCAATGTAGGCCTTGTCAACTCGGGTCATTTCAGCTTTTTACAGCTTAATTCTGTTGTGCAGCAATTACAACAAACGAGTCCTTCAAAAAGATTACCACTCGTGATCTTGCATATAAGTCGGGTTACTAGTGGTCCTGCTCAGAAGCCAAATAACAAGAGACTGTTAGAATATTGGAAGAAAAATAGTGCTCTTTATGCTACACCTCAAGGTTCTAATGATGACTGGTATTGGCTATATGCAGCTGTTAGCTGTAAAAGCTTGTTGGTGACAAATGATGAGATGAGAGACCACTTGTTCCAACTATTAGGTTCTAGTTTTTTTCCAAGATGGAAGGAAAAGCATCAGGTTAGACTGTCAACCTCAAATAGTTGGCCTTCTCTCATCATGCCTCCTCTATATTCAACAGTTATTCAGGAATCAGACAATGGAAGTTGGCACGTGCCAACTGTGAGTGAAGATGATTATGGGGCACCAGGGCAGTGGTTGTGTGCCACCAGATCTGGAAATTTATCGTCACTGCGTCAATTGTGGACTTCTTCTACCTCCGCATCTATGGCTGAAGAGGAATTAGGAGATGGGCCGAGGTCTTCCAATTTAGGTGTGACTGTATTCGTTTGTACAGTTATTAGGGTGGCTCGTGGGAACGCTGTTTATGTTAGTGTTTTATTGGCCCCACTGATGGGAACTTGTGATGAAAGTGAACATTACACTCCCATACAGCTGTGCCTTCTTCAAGTACAGACGCATCAATCAGCATCCCAGGCTCGATCATTTTCTCACGCTGGTCAAATCCAACCTTCAAGTCTCTCTTCAATTATTTTCTCCACATTGCTTCATTTTTCTCCGACTAGGACATCATTCTGGTTGGTAATGTCTCAAGAGAGTTCAGTTTCGGATCATTTGGATTCAGCTTCAGCTGAGCTCAAGCCTTACCGAGCCTTCATTTTCTCTGTACCAATCTTCTTCACTTTCATCCTGCTCTTTCTGTTCTACGTGTTCTACCTTCGACCTCGTCGGGTTGATTGGTCGTCTCTTAGGATGAGAGCGTTAGCGGCTGCGGAGGATAATGCCGGTAACTCCAGGGAGCCTGAATTGGGTTTGAAGAAAGAACTGAGAGAGATGCTGCCGATTATCGTATACAAAGAAAGCTTCTCAGTTAAAGATACGCAATGCTCAGTTTGCCTTTTGGATTACCAACCAGAAGACAAGCTTCAACAGATACCTGCATGCGGCCATACGTTTCACATGAGCTGCATTGATCTTTGGCTCACCAACCACAGCACCTGCCCTCTCTGCCGCTTGTCCCTTCTAGCTTCTGCTAAATCTTCAACTGAGACATCTAATTTACAGAGACCATCTGACAATGAAGAAACACCAACTGCACAATTATCTGAATCAAGATCTACAACGCATCCAGATAATAGTGTTGCTCAGAGTTGCTCTAGAGATAATGCAAGCAGCGCCCACTGCATTGATGTTGAAAGAGGAAATGCAGAAAGCGTTTAG 2202 0.4342 MLVDEVAPNEATFTSAARLAAARDDPEMAFELLKRMKSCGMLRSYEPSLFGFCKRGDTNKAYEVDADMIASGIMAEEPELSALLKLSVDAKKEDKVYEMLHRLRATVRQVSESTLQIIEDWFNSEDAAKVGEKYWDVSMVRKGIVQGVGGWHGKGWLGSGQWKVVKTHINDAGMCLSCNEKLVSIDIDPKETENFATSLTRWACQREAKANFNHFQKWLQQRGLFDAVVDGANVGLVNSGHFSFLQLNSVVQQLQQTSPSKRLPLVILHISRVTSGPAQKPNNKRLLEYWKKNSALYATPQGSNDDWYWLYAAVSCKSLLVTNDEMRDHLFQLLGSSFFPRWKEKHQVRLSTSNSWPSLIMPPLYSTVIQESDNGSWHVPTVSEDDYGAPGQWLCATRSGNLSSLRQLWTSSTSASMAEEELGDGPRSSNLGVTVFVCTVIRVARGNAVYVSVLLAPLMGTCDESEHYTPIQLCLLQVQTHQSASQARSFSHAGQIQPSSLSSIIFSTLLHFSPTRTSFWLVMSQESSVSDHLDSASAELKPYRAFIFSVPIFFTFILLFLFYVFYLRPRRVDWSSLRMRALAAAEDNAGNSREPELGLKKELREMLPIIVYKESFSVKDTQCSVCLLDYQPEDKLQQIPACGHTFHMSCIDLWLTNHSTCPLCRLSLLASAKSSTETSNLQRPSDNEETPTAQLSESRSTTHPDNSVAQSCSRDNASSAHCIDVERGNAESV 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0032 733 ProSiteProfiles Zinc finger RING-type profile. 623 665 IPR001841 -
Lele11g0032 733 Pfam Pentacotripeptide-repeat region of PRORP 1 128 IPR033443 -
Lele11g0032 733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 586 670 IPR013083 -
Lele11g0032 733 Gene3D Tetratricopeptide repeat domain 1 398 IPR011990 GO:0005515
Lele11g0032 733 PANTHER UNCHARACTERIZED 2 399 - -
Lele11g0032 733 MobiDBLite consensus disorder prediction 676 733 - -
Lele11g0032 733 SUPERFAMILY RING/U-box 607 670 - -
Lele11g0032 733 FunFam Proteinaceous RNase P 2 187 361 - -
Lele11g0032 733 FunFam RING-H2 finger protein ATL7 589 670 - -
Lele11g0032 733 MobiDBLite consensus disorder prediction 676 718 - -
Lele11g0032 733 Pfam Ring finger domain 622 665 IPR001841 -
Lele11g0032 733 CDD RING-H2_EL5_like 622 665 - -
Lele11g0032 733 Pfam Protein-only RNase P 169 395 IPR031595 -
Lele11g0032 733 Gene3D - 187 361 - -
Lele11g0032 733 SMART ring_2 623 664 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0032 Lele-ChrLele11 1261998 1271750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0032 535 732 C3H Transcription Factor Family AT4G10150 50.725 2.27e-58 196