Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0028 ATGACTCCGGCGAATTTGGCAGGCCAGTTTGGTGACACAACATACACAAAGGTATTCGTAGGAGGATTGGCTTGGGAGACTCAGAAGGAAACTATGAAGAAATACTTTGAGCAGTTTGGTGAGATCTTAGAGGCTGTCGTCATCACTGACAAAGCTACTGGCAAATCTAAAGGCTATGGATTTGTAACTTTTCGGGAATCAGAGGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCAGTGATAGATTGTAGGAGGGCCAATTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCCAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGGAGGAACTTTAGGGTGATGGGTTCGTTTCAGACAGGATTTGGAGGAGTAGGAGCAACTTTTCCTTCTGCTGCTCCATCAACACTTCCTCATTATGCTCTCCAGCAAGGAGCTCCTTATAATGTTTATGGGTACTCTCCATACTCACCAGATTACACTTACCCAACGGGTTACTATAGTGTGTATGGAGGAGCCACCCAGTACCCACTGTATGGAACAGGACCAGGGGGCATGATGACCAGTGCCGCGGCAGCAGCCACCGCCATCTACCCATATCTGCAGGTCGGAGAAGGGAGCGGCAGTGGCGTAACTGGCGGCTACACTTCCGGTCAGGGCTACGGTGTTTACTACCCGCCACAGCTGTTTCAGTACTCTCCCATCACCTCATCTGCTGGCTACGCCCAGCACTATGCTCCACCCATGTCTCTTGCACCTTCGCCAGCTTTGCAATCAGTGTGTTTTGCTGTGCCGCAGGCGTGA 804 0.5137 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGKSKGYGFVTFRESEAAMRACVDAAPVIDCRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGVGATFPSAAPSTLPHYALQQGAPYNVYGYSPYSPDYTYPTGYYSVYGGATQYPLYGTGPGGMMTSAAAAATAIYPYLQVGEGSGSGVTGGYTSGQGYGVYYPPQLFQYSPITSSAGYAQHYAPPMSLAPSPALQSVCFAVPQA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0028 267 CDD RRM_RBM24_RBM38_like 16 91 - -
Lele11g0028 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Lele11g0028 267 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Lele11g0028 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Lele11g0028 267 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lele11g0028 267 Gene3D - 4 113 IPR012677 -
Lele11g0028 267 PANTHER BOULE-RELATED 4 241 IPR037366 -
Lele11g0028 267 SUPERFAMILY RNA-binding domain, RBD 12 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0028 Lele-ChrLele11 1230748 1235824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0028 1 189 C2H2 Transcription Factor Family AT2G19380 28.365 2.04e-13 68.2