Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0026 ATGGAACCCTCAAGCTCTCAAATTCCATTGTTCACCCCGAAGAGCTCTCTGATCCCAGATTTATCGTTGCCATTATCAAACCCAGAAGATCAGAGATCTCAGGTTGGAGTTGAATGGAGCTGGGAAGAGAACAAGGCATTTGAGAATGCTTTAGCGGAGTTTGGTTTTGAATCTGAACTGCTACTTCCGAATCTTGCTTTGAGAATCCCAGCGAAAAGCATATCTCAGTTGGAAGAGCATCTGAAAGCTCTGGAAGATGACATTAACATGATTGAGTGGTCATATTTTGAAGAAATTCTCGACCTCGTAAAGAGTGACGACAACACAGACGATTCAAGCCAACAAGGAAGCAAGAATAATAATGAACAACAAGAAGCTCCTAAGAAACCAGCAGAAGCATCAAGATCTGTTCCTAGGCAACGTAGAAAAGGAACTCCTTGGACCAAGACTGAACATGAAATGTTCTTAGTGGGACTTGACCGCTATGGAAGAGGTGATTGGAGGAGCATATCAAAGTACTTGGTGCCATCTAAAACTCCAACTCAAGTGGCAAGTCATGCACAAAAGTACTTTCTCAAACTTGAAAACCCCAAGTCTCGTCTGAGAAAAGACGGATCATTCATGCGAACGGTGGACGATTCACCAAAGCCGGCGGCCACAAATGCGCAACTTACCATCTCCGATGACAAGAAGCCATGA 699 0.4392 MEPSSSQIPLFTPKSSLIPDLSLPLSNPEDQRSQVGVEWSWEENKAFENALAEFGFESELLLPNLALRIPAKSISQLEEHLKALEDDINMIEWSYFEEILDLVKSDDNTDDSSQQGSKNNNEQQEAPKKPAEASRSVPRQRRKGTPWTKTEHEMFLVGLDRYGRGDWRSISKYLVPSKTPTQVASHAQKYFLKLENPKSRLRKDGSFMRTVDDSPKPAATNAQLTISDDKKP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0026 232 SUPERFAMILY Homeodomain-like 140 196 IPR009057 -
Lele11g0026 232 Coils Coil 74 94 - -
Lele11g0026 232 ProSiteProfiles Myb-like domain profile. 139 191 IPR001005 -
Lele11g0026 232 ProSiteProfiles SANT domain profile. 147 197 IPR017884 -
Lele11g0026 232 MobiDBLite consensus disorder prediction 128 149 - -
Lele11g0026 232 Pfam Myb-like DNA-binding domain 146 191 IPR001005 -
Lele11g0026 232 SMART sant 143 193 IPR001005 -
Lele11g0026 232 SMART sant 35 87 IPR001005 -
Lele11g0026 232 CDD SANT 146 191 IPR001005 -
Lele11g0026 232 MobiDBLite consensus disorder prediction 106 149 - -
Lele11g0026 232 FunFam transcription factor MYB1R1 145 196 - -
Lele11g0026 232 Gene3D - 36 85 - -
Lele11g0026 232 MobiDBLite consensus disorder prediction 203 232 - -
Lele11g0026 232 Gene3D - 145 196 - -
Lele11g0026 232 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 34 200 IPR043363 -
Lele11g0026 232 MobiDBLite consensus disorder prediction 1 36 - -
Lele11g0026 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 195 IPR017930 -
Lele11g0026 232 MobiDBLite consensus disorder prediction 109 127 - -
Lele11g0026 232 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 143 193 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0026 Lele-ChrLele11 1211353 1213524 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele11g0026 Myb_DNA-binding 1.1e-10 CL0123