Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0025 ATGAAGAGGAGAGTCTCCGCCGATCTTTATGATTTTCTCACTTTTCCGGCCGCTGGTGACCGCTGCTGCGACGATGTGGGCTGTGGCGGTCAACCGTTCTGGAAAACCGTTCAGCGGTTTCTTACTAATTATGCGATGGTCACATATCCCCCCTCGTTATTTTCCTCGTTGACGACGTGGCAGATATTGTTCCGGATCGGAGAACTCGTCGATGGGTCCGATCTTTCGCCAGCGATTGTTACTGTCGACATTGTGGAGGAGGACGTAACTCGATCTCGAGCCTCAGTCTACTGTGATCAGTGCCGAGTTGTTGGATGGAGTGGCCATCCGGTATGCCGAAAGCGATATCACTTCATTATCCGAGCTTCAAGTAATCACATGGATGCATATGAAAGACCTTGTTCATCATGTGGGAAATCTACCCAATTATCGGAAGCAAGGTGTAAATGGTGTGAAGCTGTTGTTACTGTTGAAGATCTTGAGGATTGGGTGTATGGTCAAATTGAAGATAACACTCATCTTCTGCACGGGATTGTCCACTCCAATGGTTATGGCCATTTGCTTACTCTTAATGGAAGAGAGGGTGGTTCAAAGCTTCTCTCTGGGTCTGACATAATGAGTTTCTGGGATAGGCTTTGTGTTGCACTTGCTGTTAGGAAGGTTAGTGTGATGGATTTGTCAAAGAAATTTGGGATGGAATATCGATTGCTTCATGCAATCACCTATGGGTGTTCTTGGGCTGTGGAGTTCAGGCTTGAAACCTTGAATGTTACGGAAAATGAAGTTAGCGCAAATTCAGGATATCCGTCAAAAGAGCAAGTGATTGTGGATTTGAAATTCTTGTTTGATTCAATCATTCATCCTGAAAAGATGGTGAGCTACCGACACAAGATTATGAGGAAGCGGGTGGCTGATTCGGGGAGGAAGCTCCTCGACTGCAAGCAGTTCATGAAGGATTATAAGCCTGATAGGATGGCAGGTGGACAGGTGCCTCCATGTATTAGGCTGTGGTGTCATGTGGAGCTTTACGATCAGCCAAAAGATGATCCAACTCCTCCAGAACTGGTTTTGCTGCCCTTGAACGCGACTGTAGCTGACCTCAAAAATGAGGTGACTAATACTTTTCAAGAAGTGTACGCCATGTACAAGAGGTTTCAAGCCGAGGAACTTCTGGAATATGGGTCTATCAAGGACAATCTCACTGTAAAGTTGCTACTTGGAACAAGTGGGTCTGTCCGAATTTTAGGCAAGTGCCCGGCAAAACATGGCCTGAACCGCTTCCGAATGGAAAGAGGAACAGAGACGTGGAAAGTTGATTGCCCCTGTGGGGCTAAGGACGATGATGGGGAGAAGATGTTAGCATGTGACACTTGCGGTGTCTGGCAACATACCAGGTGTGCTGGTATTGATAATTCCAATGTTGTTCCTTCTAAGTTCGTTTGCATGAGATGCATCAAACCATACCGAAGGGAGGCCAAGAAACAGCCTGACTCTGTTGAGCCAAAAATCCACACTAAGGATAAATCAAAAAACGACCATGTTGAAGAAACAAATCTAACTTGTAAAAAGAACAACTCAATGGAGGAAGCAAGAACCCCCAGTAAAGCAAAGACGTCGTGCAGGGGTGAGGTGGCAGCAGCAGACAATCCTGCAGTTGCTTGCAACCTGGCTCTGAATTTTGGTGTACGTTGA 1692 0.4628 MKRRVSADLYDFLTFPAAGDRCCDDVGCGGQPFWKTVQRFLTNYAMVTYPPSLFSSLTTWQILFRIGELVDGSDLSPAIVTVDIVEEDVTRSRASVYCDQCRVVGWSGHPVCRKRYHFIIRASSNHMDAYERPCSSCGKSTQLSEARCKWCEAVVTVEDLEDWVYGQIEDNTHLLHGIVHSNGYGHLLTLNGREGGSKLLSGSDIMSFWDRLCVALAVRKVSVMDLSKKFGMEYRLLHAITYGCSWAVEFRLETLNVTENEVSANSGYPSKEQVIVDLKFLFDSIIHPEKMVSYRHKIMRKRVADSGRKLLDCKQFMKDYKPDRMAGGQVPPCIRLWCHVELYDQPKDDPTPPELVLLPLNATVADLKNEVTNTFQEVYAMYKRFQAEELLEYGSIKDNLTVKLLLGTSGSVRILGKCPAKHGLNRFRMERGTETWKVDCPCGAKDDDGEKMLACDTCGVWQHTRCAGIDNSNVVPSKFVCMRCIKPYRREAKKQPDSVEPKIHTKDKSKNDHVEETNLTCKKNNSMEEARTPSKAKTSCRGEVAAADNPAVACNLALNFGVR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0025 563 Pfam PHD-finger 440 485 IPR019787 -
Lele11g0025 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 489 IPR013083 -
Lele11g0025 563 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 3 246 - -
Lele11g0025 563 SMART PHD_3 439 485 IPR001965 -
Lele11g0025 563 CDD PHD_MMD1_like 439 484 - -
Lele11g0025 563 SUPERFAMILY FYVE/PHD zinc finger 430 486 IPR011011 -
Lele11g0025 563 MobiDBLite consensus disorder prediction 493 516 - -
Lele11g0025 563 ProSitePatterns Zinc finger PHD-type signature. 440 484 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0025 Lele-ChrLele11 1201443 1204338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0025 270 484 PHD Transcription Factor Family AT5G22260 23.451 3.69e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele11g0025 PHD 3.2e-09 CL0390