Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1285 ATGCCTTTTCCGACTAAATCAATCAAGGCTGCTCAGGAAGGCGGTGGCACCGTCAAGGATTTCGAAGATCCTGAGACCCCTTCCAACAATCTATGGGTTGGCAATTTATCGCACGAGGTTACCGAGTCCGATCTTATGGCTCTCTTCGCCCAATACGGCGCTCTAGATAGCGTCACGTCGTATTCCTCTCGGAGTTACGGCTTCGTGTTTTTCAAGCGCGTCGAGGATGCCAAGGCTGCCAAGTACGCGTTACAAGGCACTCTTCTGCGCGGAATTCCCATGAAGATTGAGTTTGCGAGACCGGCAAAGCCATGTAAACAACTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGAACTGGAGGCTGAGTTTCGCAAATTTGGTAAGATTGAGGATTTTAAGTTCATCAGAGACCGCAACACTGCATTTGTTGAATATTTCAATTTAGATAATGCAATTCATGCCATGAAAATGATGAATGGAAAGCGTATTGGTGGCGACCAAATTCGTGTAGATTTCCTTCGATCACAATCGTCAAAAAAGGATATGTTGCTTGAGTATGGGCAGTTTCAGATGGGCCCTCCTGATTTCTACGCTGGTCAGAAAAGAACACTGCAAACACAGCCTTTAGTTGGGAGGAAGGCAGATAGTCAACCCAGCAATATTTTGTGGATTGGTTATCCTCCTTCTCTTCAGATTGATGAGCAAATGCTCCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTTCAAGGCACTACTCATTTGTGGAATTCAGGAGCGTGGATGAAGCCCGACGTGCCAAAGAGGGTCTTCAAGGTCGCCTTTTCAATGATCCTCGGATTACTATTATGTATTCAAGCAGTGATTTGGCACCTGGCAAAGATTACCCTGGCATTTTCCCTGGAAGCAAAGGACCTAAACCTGACATGTTCCTAACTGAGCAAACATTTCGACCATTACAGATGGATGTGTTTGACCATAATCGTCCTCTGGTTTCAAATAATTTTCCTGGCCAGATAGCACCTGGTGTTATTGTTGGACCAAATGTACCATTGAGACCTTTTGGTCCTCAAGGTAGTCTTGAACCTTTGCTTTCAGGCAGTGAATTCAGTGAACTGGGCACAAACCCAAAGTTTCAGGATGGTAGCTCCAAAAGTCAAATGGGTCCAAATTGGAAACGGCCTTCTCCTCCAGCACCAGGGATGCTTCATTCTGCACCGGGTATTAGACCTCCTACTAGATCCACATCTAGCGCATGGGATGTGCTCGACATAAACCAGTTTCAGAGGGATTCTAAGCGTTCAAGGATAGATGGTGCTTTACCTGTTGATGATGCTCCCTTTCCTTTAAGGAATGTTGATGATCGTGTAGTAGGGTTAGAGCAATCTTATGGGATGGAGCCAGTTATTGATGGTGGTTCTGGTACATTTGTAAACATCCAAGGGAGCGCTCACCCTGGTCCAGTGGGCACAAGGATCTCAACTGGAGTACCTGCTACTGGTCAAGTTGATATTGATCACATATGGCGTGGGATAATTGCAAAAGGGGGAACACCAGTTTGTCAAGCAAGATGTGTCCCTATAGGAAAAGGGATAGGGGCTGAGCTTCCAGAAGTTGTTGATTGCTCAGCCAGGACTGGATTGGATATGCTAACAAAACATTATGCAGATGCTGTTGGTTTTGATATTGTCTTCTTTCTACCAGATAGTGAAGATGACTTTGCATCATACACTGAATTTCTTCGCTACCTTGGCGCTAAAAACCGTGCTGGTGTTGCCAAATTTGTTGATGGCACCACTCTATTTTTGGTGCCTCCATCTGATTTCTTAACAAAGGTTTTAAAAGTTGCTGGGCCGGAACGTCTATATGGTGTGGTTCTTAAGTTTCCATCTATGCCAAGTGGAACATCATTGCAACAGCCACTGCCTTCAACTCAGTATATTGATAGGCAGCAGGTTCCTCCTTCTCAAGTAGAGTATGGTCAGATCCCTGCTAAGGAAGAAGAAACTTTGCCTATGGATTATAATAGATTGTTGCATGATGAGTCTAAAGTTCCTTCAAAACCACTTTATCCAGCTACAAGTGGCACCTCTTTAGTTCAGTCTGTACCCGCAGATTATACTTCTAGCAATGCTGCTGCAGTGACCCAACCTGGAGTTACGTTAACACCTGAGCTTATTGCCACTCTAGCCTCTTTGCTTCCTGGAACTACACAATCATCTGCCACTGAGGGTGCCAAGTCATCAGTAGGCTCCTCAACCATGAAAGCTCCATTTCCTCCAGTTGTGCCCACTGACGGAAACCAATCTCATGTATGGAAACAGGACCATCAAATTAGAGATCCATCCAGTCATATCCTTCAACAGGCAGGAGGCAGTACGTACTATCAACCTTATCCACTATCATCTACTTATGGCCATCCTGGTCAAGTGGTCCCTGGCAGTTCAAATATCCAGGATTCTGCTGCCAGCTTACAGCAGCAGGTTGCCATCTCAGCTAGACCCATGAGTAACTTCTTGATGCCTTCTCAAAGCGGACAAGCAACTTTATCCCTCCCAGTGAATCAACCATATCAGGTTGAAGTCTCCTCCAGCTCTCAGAAAGGCTATGGAGTGGTTCCGGGAATAGATGCCTCTGTTTTATATAGTTCTCAGGCTTTTCAGAATCCTAATATTTCTGTTTCCTCGTCTAATCAAGTTCATGGTGTTAACCCTTCTCAGCAACAAACTGCTATGCCATATTCAGCAGACAAAGTGAACGCAGAGCCTCCAAATCAGCAGTTTCAAGCTGCTCTCCAAGGAGCTAGTCAGGGCACATCATCAGAAGTGGAGGCTGATAAAAACCAGAGGTACCAGTCAACACTGCAATTTGCTGCCAATCTTCTCCTCCAAATACAGCAGCGGCAGCAGCAGCAACAGCAACAAACCCAAGGAGGCCGCGAGGCTGGAAATCAACAATGA 2985 0.4543 MPFPTKSIKAAQEGGGTVKDFEDPETPSNNLWVGNLSHEVTESDLMALFAQYGALDSVTSYSSRSYGFVFFKRVEDAKAAKYALQGTLLRGIPMKIEFARPAKPCKQLWVGGISPAVTKEELEAEFRKFGKIEDFKFIRDRNTAFVEYFNLDNAIHAMKMMNGKRIGGDQIRVDFLRSQSSKKDMLLEYGQFQMGPPDFYAGQKRTLQTQPLVGRKADSQPSNILWIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDLAPGKDYPGIFPGSKGPKPDMFLTEQTFRPLQMDVFDHNRPLVSNNFPGQIAPGVIVGPNVPLRPFGPQGSLEPLLSGSEFSELGTNPKFQDGSSKSQMGPNWKRPSPPAPGMLHSAPGIRPPTRSTSSAWDVLDINQFQRDSKRSRIDGALPVDDAPFPLRNVDDRVVGLEQSYGMEPVIDGGSGTFVNIQGSAHPGPVGTRISTGVPATGQVDIDHIWRGIIAKGGTPVCQARCVPIGKGIGAELPEVVDCSARTGLDMLTKHYADAVGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPSMPSGTSLQQPLPSTQYIDRQQVPPSQVEYGQIPAKEEETLPMDYNRLLHDESKVPSKPLYPATSGTSLVQSVPADYTSSNAAAVTQPGVTLTPELIATLASLLPGTTQSSATEGAKSSVGSSTMKAPFPPVVPTDGNQSHVWKQDHQIRDPSSHILQQAGGSTYYQPYPLSSTYGHPGQVVPGSSNIQDSAASLQQQVAISARPMSNFLMPSQSGQATLSLPVNQPYQVEVSSSSQKGYGVVPGIDASVLYSSQAFQNPNISVSSSNQVHGVNPSQQQTAMPYSADKVNAEPPNQQFQAALQGASQGTSSEVEADKNQRYQSTLQFAANLLLQIQQRQQQQQQQTQGGREAGNQQ 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1285 994 SUPERFAMILY RNA-binding domain, RBD 103 183 IPR035979 GO:0003676
Lele10g1285 994 Gene3D - 5 104 IPR012677 -
Lele10g1285 994 SUPERFAMILY RNA-binding domain, RBD 22 103 IPR035979 GO:0003676
Lele10g1285 994 FunFam Flowering time control protein FPA 21 103 - -
Lele10g1285 994 SMART rrm1_1 30 97 IPR000504 GO:0003723
Lele10g1285 994 SMART rrm1_1 224 292 IPR000504 GO:0003723
Lele10g1285 994 SMART rrm1_1 107 174 IPR000504 GO:0003723
Lele10g1285 994 CDD RRM3_Spen 108 177 - -
Lele10g1285 994 PANTHER RNA RECOGNITION MOTIF-CONTAINING 22 99 - -
Lele10g1285 994 MobiDBLite consensus disorder prediction 746 763 - -
Lele10g1285 994 Gene3D - 105 185 IPR012677 -
Lele10g1285 994 MobiDBLite consensus disorder prediction 746 777 - -
Lele10g1285 994 Gene3D - 213 304 IPR012677 -
Lele10g1285 994 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Lele10g1285 994 CDD RRM3_Spen 225 294 - -
Lele10g1285 994 MobiDBLite consensus disorder prediction 374 409 - -
Lele10g1285 994 MobiDBLite consensus disorder prediction 377 399 - -
Lele10g1285 994 FunFam flowering time control protein FPA 216 309 - -
Lele10g1285 994 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 91 IPR000504 GO:0003723
Lele10g1285 994 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 172 IPR000504 GO:0003723
Lele10g1285 994 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Lele10g1285 994 CDD RRM3_Spen 31 100 - -
Lele10g1285 994 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Lele10g1285 994 SUPERFAMILY RNA-binding domain, RBD 217 296 IPR035979 GO:0003676
Lele10g1285 994 Pfam SPOC domain 513 628 IPR012921 -
Lele10g1285 994 MobiDBLite consensus disorder prediction 1 26 - -
Lele10g1285 994 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1285 Lele-ChrLele10 23770407 23778822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1285 11 286 Eukaryotic Initiation Factors Gene Family AT4G34110 25.249 3.25e-13 71.6