Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1258 ATGAAAGGAAATAAAGGAAGCCTATTCCTCCGCAAACCTTTCGTTGAAACCGCCGCCCATCAGCACCCGCTTGTCTTCTATTTCGAGTCAATGAACCCTCTGTCTAAGAAGGGAATAGCTGAAGCTAGTAGAATGCATGATCTTAAGACCCCTTTGTTGCAGACTCCACAAGATGCCACGCTCAGGGAAGTTAAGTTTAGAATACAAGATATTACTTGTGCATCCTGTGTAAATTCAATAGAATCTGTGGTTGGAAACCTTGATGGAGTTACTGGTGTTATGGTGTCAGCAATTGATGGCAAAGCTACAGTCAAGTATGTGCCAAAGCTCATTAGTGTCAAGAAAATAAAAGAAACTGTAGAAGAAGCAGGTTTTAAAGTTCACGAGCTTTCGGAGCAAGACATATCAGTATGTAAGGTCAGGATTAAAGGAATGGCGTGCACAAGCTGCTCTGAATCAGTTGAGCGTGCTCTTCAAATGGTTGATGGTGTGAAAAAAGCAGCAGTGGGCCTGGCTTTAGGAGAAGCAAAAGTGCATTTTGATCCTAATCTTACCGATACAAACAAAATAATTGAAGCAATAGAAGATGCTGGCTTTGGAGTGGATCTCATTAGCTCGGGGACTGATGTGAACAAAGTGCATCTGAGACTTGAAGGACTAGATTCTCCAGAGGATGTTAATGTTGTAATGTCATCTCTTGAATTAGCTGAAGGTGTAAATCATGTTGAGATGGACTTGACAGAACGTAAAGTTACGGTTACCTATGATCCAGATGTTACAGGTCCCAGATCTCTTATACAGTGCATTCAAGCAGTTGCTCATGGCCCCAGTGGATATCATGCAACCTTGTACTCTCCTTCAAGACAAAGAGAAACAGGGAGCATGGATGAAATTCATATGTATAGGGACCAATTTCTTTTCAGCTGCTTATTTTCAGTTCCCGTGTTCTTATTTGCCATGGTACTTCCCATGCTTCCTCCTTATGGCAACTGGTTGAACTATAAGATCCACAATATGTTAACTATTGGAATGTTTCTAAGATGGATCCTTAGCACACCTGTTCAGTTCATAGTTGGGAAAAGGTTCTATGTTGGATCATATCATGCCCTGAGGCGAAGATCTGCTAACATGGATGTACTGGTTGCACTTGGCACTAATGCTGCGTATTTTTACTCTATTTATATTCTAATAAAAGCTCTCACTTCAGTAACATTTCAAGGACAAGATTTCTTTGAGACCAGTTCCATGTTAATATCCTTTATTCTCTTGGGAAAATATTTGGAGGTTGTGGCTAAAGGGAAAACGTCAGATGCTTTAGCAAAGTTGACACAACTTGTTCCTGATAAAGTTTGTTTATTGGCCCTGGATGCTGATGGAAATGTCATCTCTGAGACAGAAGTCGACACTCAATTTATACAAAGGAACGACATAATTAGAGTTGTTCCTGGGGCCAAAATTCCTGTCGATGGTATTGTTATAAAAGGGCAAAGTTATGTAAATGAAAGTATGATCACGGGTGAGGCAACATCTATTGATAAAAGTCCGGGAGACAAGGTTATTGGTGGGACCGTGAATGAGAACGGCTGCTTACTGGTTAAGGCCACACATGTTGGAACAGAAACTGCACTTTCTCAAATCGTTCAGCTTGTAGAATCTGCTCAACTCGCTAAAGCACCGATTCAAAAACTTGCCGACCAAATTTCAAAAGTTTTTGTTCCAATAGTGGTTGTCGCAGCATTCATAACCTGGTTGGGATGGTTTATTCCAGGGGAAGCTGGCATTTACCCTAAGTATTGGATACCAAAAGCTATGGATGCATTTGAGCTTGCTTTGCAGTTTGCTATTTCAGTTCTAGTTGTTGCCTGTCCATGTGCTCTGGGTCTAGCAACGCCAACAGCAGTCATGGTTGCTTCAGGTATGGGTGCTTCTCAAGGGGTACTCATCAAGGGAGGGGATGCACTAGAAAAGGCACACAAGGTTAAAGTTGTTGTGTTTGATAAGACAGGGACACTTACCATTGGAAAACCAGAGGTAGTTAGTGCGGTGCTATTTTCTGAATTTTTGATGGAGGAGTTATGTGACGTGGCTATTGCAGTGGAGGCAAGCAGTGAACACCCAATAGCAAAAGCTGTTGTGGTTTATGCAAAGAGGCTGCGCCAGAAGTTTGGGTCTAGTGCTGAGCAAGTCTTTGATGTGAAGGACTTCGAGGTGCACATGGGGGCTGGGGTAAGTGGAAAAGTTGGTGGGAGAACAGTTTTAGTTGGGAACAAACGTCTAATGCATTCTGGTAATGTTCCAATAAGTCCCGAGGTTGAAAGGTATGTTTCTGAAAATGAAGTTATGGCTAGAACTTGTGTGTTGGTTTCAATCGACGGAAAGATTGCTGGAGCTTTCTCTGTAACTGATCCTGTAAAGCCTGGGGCTAAGCGTGTGATATCTTTTCTCCACTCCATGGGCATCTTAAGCATCATGGTGACCGGCGATAACTGCGCTACTGCAACTGCTATTGCAAATGAAGTTGGTATAGACGAGGTCTTCGCTGAGACTGATCCACTGGGAAAAGCAGATAAGGTTAAAGACTTACAGATGAAAGGTATGGTGGTGGCAATGGTGGGCGATGGAATCAATGACTCACCAGCTTTGGTCGCTGCTGACGTCGGCATGGCAATCGGTGCTGGAACTGACATAGCCCTAGAAGCAGCTGATATAGTTCTGGTCAAAAGCAGCTTGGAAGATGTAGTTACAGCCATAGATCTGTCGAGGAAGACCATGTCTCGAATCCGTCTCAACTATATCTGGGCTCTTGGTTACAACATTCTTGGCATGCCAATTGCTGCTGGCATCTTGTTCCCCTTCACCGGAATCAGGTTGCCCCCGTGGCTTGCCGGTGCTTGCATGGCTGCTTCTTCTCTCAGTGTTGTTTCTTCCTCTCTCTTGTTGCAGCTCTACAAGAAACCTTTGCACGTGGCGTCCTCTTGA 2979 0.435 MKGNKGSLFLRKPFVETAAHQHPLVFYFESMNPLSKKGIAEASRMHDLKTPLLQTPQDATLREVKFRIQDITCASCVNSIESVVGNLDGVTGVMVSAIDGKATVKYVPKLISVKKIKETVEEAGFKVHELSEQDISVCKVRIKGMACTSCSESVERALQMVDGVKKAAVGLALGEAKVHFDPNLTDTNKIIEAIEDAGFGVDLISSGTDVNKVHLRLEGLDSPEDVNVVMSSLELAEGVNHVEMDLTERKVTVTYDPDVTGPRSLIQCIQAVAHGPSGYHATLYSPSRQRETGSMDEIHMYRDQFLFSCLFSVPVFLFAMVLPMLPPYGNWLNYKIHNMLTIGMFLRWILSTPVQFIVGKRFYVGSYHALRRRSANMDVLVALGTNAAYFYSIYILIKALTSVTFQGQDFFETSSMLISFILLGKYLEVVAKGKTSDALAKLTQLVPDKVCLLALDADGNVISETEVDTQFIQRNDIIRVVPGAKIPVDGIVIKGQSYVNESMITGEATSIDKSPGDKVIGGTVNENGCLLVKATHVGTETALSQIVQLVESAQLAKAPIQKLADQISKVFVPIVVVAAFITWLGWFIPGEAGIYPKYWIPKAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGDALEKAHKVKVVVFDKTGTLTIGKPEVVSAVLFSEFLMEELCDVAIAVEASSEHPIAKAVVVYAKRLRQKFGSSAEQVFDVKDFEVHMGAGVSGKVGGRTVLVGNKRLMHSGNVPISPEVERYVSENEVMARTCVLVSIDGKIAGAFSVTDPVKPGAKRVISFLHSMGILSIMVTGDNCATATAIANEVGIDEVFAETDPLGKADKVKDLQMKGMVVAMVGDGINDSPALVAADVGMAIGAGTDIALEAADIVLVKSSLEDVVTAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGILFPFTGIRLPPWLAGACMAASSLSVVSSSLLLQLYKKPLHVASS 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1258 992 Gene3D - 655 921 IPR023214 -
Lele10g1258 992 SUPERFAMILY HMA, heavy metal-associated domain 134 206 IPR036163 GO:0046872
Lele10g1258 992 FunFam Probable copper-transporting ATPase HMA5 791 928 - -
Lele10g1258 992 ProSiteProfiles Heavy-metal-associated domain profile. 137 203 IPR006121 GO:0046872
Lele10g1258 992 CDD HMA 65 128 IPR006121 GO:0046872
Lele10g1258 992 Pfam haloacid dehalogenase-like hydrolase 660 885 - -
Lele10g1258 992 CDD HMA 215 282 IPR006121 GO:0046872
Lele10g1258 992 PRINTS P-type cation-transporting ATPase superfamily signature 500 514 - -
Lele10g1258 992 PRINTS P-type cation-transporting ATPase superfamily signature 894 906 - -
Lele10g1258 992 PRINTS P-type cation-transporting ATPase superfamily signature 796 807 - -
Lele10g1258 992 PRINTS P-type cation-transporting ATPase superfamily signature 871 890 - -
Lele10g1258 992 PRINTS P-type cation-transporting ATPase superfamily signature 664 678 - -
Lele10g1258 992 PRINTS P-type cation-transporting ATPase superfamily signature 818 828 - -
Lele10g1258 992 Gene3D - 136 207 - -
Lele10g1258 992 ProSitePatterns E1-E2 ATPases phosphorylation site. 666 672 IPR018303 -
Lele10g1258 992 SFLD p-type atpase 646 923 IPR044492 -
Lele10g1258 992 SFLD C1.7: P-type atpase like 646 923 - -
Lele10g1258 992 CDD P-type_ATPase_Cu-like 305 967 - -
Lele10g1258 992 SUPERFAMILY Calcium ATPase, transmembrane domain M 409 658 IPR023298 -
Lele10g1258 992 Gene3D - 432 554 - -
Lele10g1258 992 Pfam Heavy-metal-associated domain 140 199 IPR006121 GO:0046872
Lele10g1258 992 Pfam Heavy-metal-associated domain 216 271 IPR006121 GO:0046872
Lele10g1258 992 Pfam Heavy-metal-associated domain 66 126 IPR006121 GO:0046872
Lele10g1258 992 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 54 987 - -
Lele10g1258 992 Gene3D - 209 285 - -
Lele10g1258 992 FunFam Copper-transporting ATPase 1, putative 432 554 - -
Lele10g1258 992 ProSiteProfiles Heavy-metal-associated domain profile. 63 129 IPR006121 GO:0046872
Lele10g1258 992 Gene3D - 675 804 IPR023299 GO:0000166
Lele10g1258 992 FunFam ATPase copper transporting beta 59 132 - -
Lele10g1258 992 Gene3D - 57 132 - -
Lele10g1258 992 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 417 949 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele10g1258 992 CDD HMA 139 201 IPR006121 GO:0046872
Lele10g1258 992 SUPERFAMILY HAD-like 662 977 IPR036412 -
Lele10g1258 992 SUPERFAMILY Calcium ATPase, transduction domain A 465 550 IPR008250 -
Lele10g1258 992 SUPERFAMILY HMA, heavy metal-associated domain 207 284 IPR036163 GO:0046872
Lele10g1258 992 TIGRFAM TIGR00003: copper ion binding protein 64 127 IPR006122 GO:0005507
Lele10g1258 992 TIGRFAM TIGR00003: copper ion binding protein 140 201 IPR006122 GO:0005507
Lele10g1258 992 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 377 980 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lele10g1258 992 SUPERFAMILY HMA, heavy metal-associated domain 58 133 IPR036163 GO:0046872
Lele10g1258 992 ProSiteProfiles Heavy-metal-associated domain profile. 212 278 IPR006121 GO:0046872
Lele10g1258 992 ProSitePatterns Heavy-metal-associated domain. 142 171 IPR017969 GO:0046872
Lele10g1258 992 FunFam Copper-transporting ATPase HMA5 135 206 - -
Lele10g1258 992 Pfam E1-E2 ATPase 463 642 - -
Lele10g1258 992 PRINTS Copper-transporting ATPase 1 signature 63 88 - -
Lele10g1258 992 PRINTS Copper-transporting ATPase 1 signature 89 112 - -
Lele10g1258 992 PRINTS Copper-transporting ATPase 1 signature 160 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1258 Lele-ChrLele10 23553358 23561084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1258 58 986 Primary Pumps ATPases AT1G63440 57.112 0.0 1076