Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1244 ATGTCATCCTCAACGACATCGTATTGGTGTTACAGATGCACCCGGTTTGTTTTCCTCTCCAATGCTCCCGACCGCATTGCTTGTCCCTACTGCCGGAGTGGCTTCGTCGAAGAGATCCTCGCCAACCCATTATCCGATCGTCTTCTCACCCCGTCTCCATCTGCCATCATGTCCTTCTTCACCCTTGAACCTCCAAATTCCCTCAATTTAAGGAGACAAGGGTTCCGGAGGAGACGCCGTAATGCCGGCACCCCCTCTTCTTTTAACCCGTTGATTGTTCTCCGCGGGCCGGCCCATGGTGGTGTTGGAGAAGACGGTGGAGATCATGAAAGAAGTCGTAGCTTCCAATTGTACTATGATGACGGTGATGGCTCCGGTCCCCAACCGTTACCGCCGAATATGTCAGAGTTCTTGCTCAGGTCAGGCTTCGATCGGTTGTTGGAGCAGTTTTCGCAGACAGAAAATAATGGCCTCGAGCGGCTGGAGAATCTACCGGTGTCCAAAACGGCCATTGGATCAATGCCGACGATTGAGATAGGGGAGGACCATGTGAGTAAGGATTCACACTGTGCCGTTTGTAAAGAAGCGTTTGAGCTAGGTTCAGGGGCACGCGAAATGCCTTGCAAGCATATTTACCATTCGGATTGCATTGTTCCGTGGCTTTCAACGTGCAATTCATGTCCTGTATGTCGCAACGAGTTGCCTTCGGATGGAAACCATCTGGAAAATAGAGTATCAAGGCAAATCGATGAAGAAACGGTAGGATTAACGATATGGAGACTACTAGGTGGAGGCTTCGCCGTAGGAAGGTTTCCCCTCGATCACGGTGACGGCGAGGGTCATTGGCCAGTTGTATACACAGAAACGGATGATGCGCTCGGCGCGCTTGGCGTTCCGAGAAGAGTTTCCCGGGCACTGAGAAGTATTAGACTTAGCGAAAGTCGGGGTTTGAGCAGAATGTTTCGCACTCTCAGGGCATTCTTCGTGAGGCTCGGGTCTAGGTCAACTTCCATTTCTCAGAATGGGCCCATGAATAGAAGCCTCAGGCAAATGAGTTATGTAGTCAGTAGGAACTCGCAGAGCCGAAGAAGAAACAGGATAGTGGAAGATTAA 1113 0.5085 MSSSTTSYWCYRCTRFVFLSNAPDRIACPYCRSGFVEEILANPLSDRLLTPSPSAIMSFFTLEPPNSLNLRRQGFRRRRRNAGTPSSFNPLIVLRGPAHGGVGEDGGDHERSRSFQLYYDDGDGSGPQPLPPNMSEFLLRSGFDRLLEQFSQTENNGLERLENLPVSKTAIGSMPTIEIGEDHVSKDSHCAVCKEAFELGSGAREMPCKHIYHSDCIVPWLSTCNSCPVCRNELPSDGNHLENRVSRQIDEETVGLTIWRLLGGGFAVGRFPLDHGDGEGHWPVVYTETDDALGALGVPRRVSRALRSIRLSESRGLSRMFRTLRAFFVRLGSRSTSISQNGPMNRSLRQMSYVVSRNSQSRRRNRIVED 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1244 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 73 235 - -
Lele10g1244 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 237 IPR013083 -
Lele10g1244 370 Pfam zinc-ribbon 6 39 IPR039525 GO:0061630
Lele10g1244 370 FunFam E3 ubiquitin-protein ligase RING1-like 152 237 - -
Lele10g1244 370 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Lele10g1244 370 CDD RING-H2_RNF126_like 190 231 - -
Lele10g1244 370 SMART ring_2 190 230 IPR001841 -
Lele10g1244 370 Pfam Protein of unknown function (DUF1117) 254 358 IPR010543 -
Lele10g1244 370 Pfam Ring finger domain 189 231 IPR001841 -
Lele10g1244 370 SUPERFAMILY RING/U-box 170 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1244 Lele-ChrLele10 23468483 23469595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1244 109 242 C3H Transcription Factor Family AT5G01980 41.791 8.15e-27 109