Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1236 ATGGCGTCATCCAAAACGGCAGGACCCGTTCCGGTGGCCAACAACCCGGCGAAGCTACGTTGGGGCGAGCTTGATGAGGACGATGGGGAGTATCTTGACTTTCTGCTGCCGCCGCGTCAGGTCATAGGTCCCGATGAGAACGGGATAAAGAAGGTCATTGAATACAAATTCAATGAAGATGGCAATAAGGTCAAGATTACAACCACCACCCGGACTCGAAAGCTTGCTAATGCTCGTCTCAGTAAGCGAGCCGTTGAGAGGCGATCCTGGGCTAAGTTTGGCGATGCTGTTCACGAGGATGTTGGTAGCAGGCTCACCATGGTATCCACCGAAGAGATCCTCCTCGAACGACCTAGGGCCCCTGGTAGCAAACAAGAAGAACCAAAGGTTGCTGGAGACCCGTTGGCACAATTCCAGAAAGGTGCTGTTCTCATGGTCTGTAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGTCCTTACAAAGATCTCGCCCAACCAGTTGAGGGATTTGTTGATAAGCCTGCAGCTTCTGAAGCTGCAACTGCTGCTTCTGGTCCAGCTAAGGGAGCATATGTTCCTCCTGGCATGAGAGCAGGTGCGGAAAGGACTGGAGGATCAGACATGCGCCGCAGGAATGATGAAAATTCTGTACGTGTCACCAATCTCTCAGAAGACACGAGAGAGCCCGATTTACAAGAGCTGTTCCGTCCTTTTGGTGCCGTAAGCAGAGTCTATGTTGCTATCGATCAAAAGACTGGCATGAGCAGGGGATTTGGCTTTGTTAACTTTGTAAACAGGGAAGATGCACAGAGAGCTATTAACAAGCTCAATGGATATGGTTCCTATAATGACACGCTCTTGGAAGATGTTAAAGTATGTCAAAAGATTTTCTATCGATGCTCAATAGGTGAAATTGTTAATGTTCTTGCAAGCAAGTGGCAACTCGGTGTTTCGGTGGGCTCTCCCTGTCTTTGTCAAATCTCGCTCTGCTTTCCCCAGTTCACTGTGGCGTTTATCGACCTCTTTTCTCTAGTTGCTATGGCGTCCCTAATCGAATCTGCTTGGGAGTTTTTGATCTCTCACTTCAGCGACTTTCAACTGGCATGTCTGGGTAGTTTCTTTCTCCATGAAAGTGTTTTCTTCTTATCTGGACTTCCCTTCATATGCCTTGAGAGGGCAGGATGGCTCAGCAAGTACAAGATCCAGGCAAAAATTAACAGCCCTGCAGCTCAAGAGAAATGTATTCTTCGCTTATTGCTGTATCATTGTGGAGTCAATCTGCCTCTTATGATATTTTCATATCCTGTTTTCAGATACATGGGCACGCGAAGTAGTCTTCCACTGCCCTCCTGGAAAGTAGTTTTAACGCAAATCCTCTTTTACTTCATTTTGGAGGACTTTGTATTCTACTGGGGACATAGGGTATTGCACACGAAATGGTTGTACAAGCATGTTCACAGTGTTCATCATGAGTATGCTACACCATTTGGACTTACTTCTGAATACGCTCATCCTGCTGAGATACTTTTCCTTGGCTTTGCTACCATTGTTGGTCCTGCAATCACGGGCCCTCACCTGTTGACCCTGTGGCTATGGATGGTTCTGAGGGTCCTGGAGACAGTTGAGGCTCACTGCGGTTATCATTTTCCCTGGAGTCCTTCTATCTTCTTACCGTTATATGGGGGAGCTGATTTTCATGACTATCACCACCGTTTGTTATATACCAAGTCCGGAAACTACTCATCAACCTTCACCTACATGGACTGGATATTTGGAACTGATGTTGGTTACAGAAAGTTGAAAGCGTTAAAGAATGTGACAATTGAAGAGAACAGCAAGGAAAAGAAGCAATGGTAG 1866 0.4678 MASSKTAGPVPVANNPAKLRWGELDEDDGEYLDFLLPPRQVIGPDENGIKKVIEYKFNEDGNKVKITTTTRTRKLANARLSKRAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKQEEPKVAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPVEGFVDKPAASEAATAASGPAKGAYVPPGMRAGAERTGGSDMRRRNDENSVRVTNLSEDTREPDLQELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGSYNDTLLEDVKVCQKIFYRCSIGEIVNVLASKWQLGVSVGSPCLCQISLCFPQFTVAFIDLFSLVAMASLIESAWEFLISHFSDFQLACLGSFFLHESVFFLSGLPFICLERAGWLSKYKIQAKINSPAAQEKCILRLLLYHCGVNLPLMIFSYPVFRYMGTRSSLPLPSWKVVLTQILFYFILEDFVFYWGHRVLHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLLTLWLWMVLRVLETVEAHCGYHFPWSPSIFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDWIFGTDVGYRKLKALKNVTIEENSKEKKQW 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1236 621 Pfam Eukaryotic translation initiation factor 3 subunit G 40 166 IPR024675 -
Lele10g1236 621 CDD eIF3G 47 165 IPR024675 -
Lele10g1236 621 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 18 298 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lele10g1236 621 FunFam Eukaryotic translation initiation factor 3 subunit G 182 296 - -
Lele10g1236 621 Gene3D - 178 288 IPR012677 -
Lele10g1236 621 MobiDBLite consensus disorder prediction 184 217 - -
Lele10g1236 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 281 IPR000504 GO:0003723
Lele10g1236 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 286 IPR000504 GO:0003723
Lele10g1236 621 SMART rrm1_1 219 292 IPR000504 GO:0003723
Lele10g1236 621 CDD RRM_eIF3G_like 219 291 IPR034240 -
Lele10g1236 621 PANTHER STEROL DESATURASE 353 604 - -
Lele10g1236 621 SUPERFAMILY RNA-binding domain, RBD 183 282 IPR035979 GO:0003676
Lele10g1236 621 Pfam Fatty acid hydroxylase 462 596 IPR006694 GO:0005506|GO:0008610|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1236 Lele-ChrLele10 23421131 23428872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1236 17 290 Eukaryotic Initiation Factors Gene Family AT3G11400 68.197 1.13e-138 405