Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1234 ATGATCTCCGGTGATGCCCTTCTCACAAAATTTGATGGTTCCTTTGAAGGACAGAATCCTCCTCTTTCCTCTCTATCAAATGGTACCTCGGTCGACGGGCTTATTTTTGGCACCAGTTCAAATGAAGAATTGACGGTAACTAACAAATACTCCAATAACATCCTCAGATTCATAAGCGACATCCTCATGGATGAAGAAGACGACCTGGAGAATAAGCCCTGCATGTTGCAGCATTGTGTGGCACTTCAAGCTGCTGAAAAATTATTCTACGAGGTCCTTACTCCCAGTTGTTCCGAATCGCCTCATCACAAACCAGCTCGTAATTTTTTTTATGATAACGTCAAAGATGCACCATCTGCAAGTAGTTCAGAGAACAGCAACGGCGACACCAGTACCGATCATTCGAATGAGACCGATTGGTCTTGTTACTTATGTCCTGATCCATTAACAGGGACACAAGAATGCCATTCTCAAACACCCAGTGGGTGGAGGGAAAAGAGGATTCATCAGACAGATGATGTTACAAACGAGGAAGAGGGAAGAGGAAGTAAGATTTCGGCGGTGTACTCGGAGGAGGACTCAGAGCAATCGGCGGTGTACAATGAGCTAATCGTATGCCTGGGTCATAAGGGCATGAATATGGATTCAAAAGGATCTCCTGGTAAGGCAAATCGTTCCAAGAAAGGGCCAAATAAAGGGGCAACAGTTGATTTATGGAATCTATTGATTCAATGTGCACAGGCGGTGGCAAACTACGATCAGAGGAATGCAAACGAGCTTCTGAAGCAGATAAGGAAGCATTCTTCTCCTTTTGGGGATGGGATTGAGCGTTTGGCTCATTACTTTGCCAATGGACTGGAAACGCGTTTGGCTGCTGGGAAGCCATCTTATATGCCGCTCCATTCCAACGGGTTTTCTGCTGCTGATATGTTGAGAGCTTGCAAGCTCTACATCACAGCTTCACCATTCCAGAGAGTCACCAATTTTATGACAAACGCAATGATCTTGAAGCAAGTTGAGAACGGAAGAAGCCTTCATATTATTGATTTTGGTATTAACTACGGTTTCCAGTGGCCTTGCCTGATTTATCGTCTTTCAATCAGATCAGGAGGACCGGTCAAGGTTCGGATAACAGGAATCGATTTTCCTCAGCCGGGATTTCGCCCCACTGAGAGGCTTGAGGAGACAGGCAGGCGTTTGGCTAATTATAGCAGAAGGATGAATGTGCCATTTGAGTACAATTGCGTTGCACAGAAATGGGAAACCATACAACTTAAGGATCTCAAAATAGACCCAAGTGAGGTAACAGTTGTGAACTGCATGTACAGAATGAAGAAGCTACCCGATGAGACTGTGGAGGTGGAGTGTCCAAGAGATGCTGTTTTGAAGATCGTCAGGGAGATTAAACCAAGCCTCTTCATGCATGGAATTGCCAATGGCACGTATAATGCGCCATTTTTCCTAACTCGGTTCAAGGAGGCGCTGTTCCACTTCTCGACATTGTATGATATTCTTGAGGCTAACGTGGGACGTGAGGATCCGCAGAGGGTGATCATTGAGAAAGAGATGTTTGGGAGGGATGCGATAAATGTGATAGCGTGTGAGGGGGCGGAGAGAGTAGAAAGACCAGAGACATACAAGCAGTGGCAGGTTAGGAACCAGAGAGCTGGATTCAAGCAAATCTGCTTGGATGCGGAACGGCTCAGGAAATCAAAAGAATTTGTGAAGACGGAATACCATAAAGATTTTGTGGTAGAAGAAAATGGCAAATGGGTCTTGCTGGGATGGAAGGGCCGTATTATTCATGCTATTTCCTGTTGGATACCTGCTTAA 1833 0.4534 MISGDALLTKFDGSFEGQNPPLSSLSNGTSVDGLIFGTSSNEELTVTNKYSNNILRFISDILMDEEDDLENKPCMLQHCVALQAAEKLFYEVLTPSCSESPHHKPARNFFYDNVKDAPSASSSENSNGDTSTDHSNETDWSCYLCPDPLTGTQECHSQTPSGWREKRIHQTDDVTNEEEGRGSKISAVYSEEDSEQSAVYNELIVCLGHKGMNMDSKGSPGKANRSKKGPNKGATVDLWNLLIQCAQAVANYDQRNANELLKQIRKHSSPFGDGIERLAHYFANGLETRLAAGKPSYMPLHSNGFSAADMLRACKLYITASPFQRVTNFMTNAMILKQVENGRSLHIIDFGINYGFQWPCLIYRLSIRSGGPVKVRITGIDFPQPGFRPTERLEETGRRLANYSRRMNVPFEYNCVAQKWETIQLKDLKIDPSEVTVVNCMYRMKKLPDETVEVECPRDAVLKIVREIKPSLFMHGIANGTYNAPFFLTRFKEALFHFSTLYDILEANVGREDPQRVIIEKEMFGRDAINVIACEGAERVERPETYKQWQVRNQRAGFKQICLDAERLRKSKEFVKTEYHKDFVVEENGKWVLLGWKGRIIHAISCWIPA 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1234 610 ProSiteProfiles GRAS family profile. 229 608 IPR005202 -
Lele10g1234 610 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 174 600 IPR005202 -
Lele10g1234 610 Pfam GRAS domain family 240 607 IPR005202 -
Lele10g1234 610 MobiDBLite consensus disorder prediction 154 183 - -
Lele10g1234 610 MobiDBLite consensus disorder prediction 115 136 - -
Lele10g1234 610 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1234 Lele-ChrLele10 23407817 23409649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1234 50 609 GRAS Transcription Factor Family AT2G29060 42.649 4.99e-167 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele10g1234 GRAS 2.7e-109 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1286 30 15357912 15359215 Lele10g1234 10 23407817 23409649 CCT
Lele10g1234 10 23407817 23409649 Lele11g1262 11 19563997 19565814 hybridization
Lele10g1234 10 23407817 23409649 Lele12g0060 12 548875 550707 hybridization