Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1232 ATGTCACCCAACACTTGCGTGATACTTGAGCTCACTACTTGTATTAACCTTTATTCTCTTCTCCCATTGCTGTGTGAAAGCAAATTTCTTCTGCTTTCACGCGCAATTCTTTCAGCTGCTCGTGGAACTGCTAATAAGTTATTAAAGCAAATTAGGCAGCATTCTTCCTCAACAGGAAGTGGATCTCAGAGGTTAGCCCACTGCTTTGCAAATGCCCTTGAAGCATGCTTGGCTGGCACGGGCTCTCAGATATACTCTGCTTTATCCTCCAAAAGAACTTCTTCTGCAGACATGATCAAAGCATGCCAAATATTTCGTCATTTGTTATGGCTTCCAATGGTCTTCCTTTATCTTTCGTCTCTCCAACCGAACTGGTGGGACCCCCCCAAGCTGCGCATCACAGGGATTGATCTCCCACAATCCAGTTTGAGGCCGGCAGAGAGTCCAAGAGACTGGGCGGCACCTCGCGAGAAATGGGAAACCATCAAGCTTGAAGACCTGAAGATAAAGAAAGATGAACTCGTGGCTGTGAATTGTCAGAAGCGATTTAAGAATTTTCTTGATGAGACAGTCGTGGTGAATAGTCCTAGAGACACTGTTTTAATGTTAATTAGGAAGGCAAACCCCAGGATGTTTGTGCAGACTATAGTCAACGGGTGCTATAATGCGCCATTCTTCGTGACGCGATTCCGGGAGGCTCTGTTCCATTACTCCTCAATGTTTGATATGCTTGACACTAATGCTGATGGTGAAGATCCAATGAGGTTTCTGTTTGAAAAGGAGTTTCTTGTAAAAGATGTAACGAATATCATAGCTTGTGAGGGTTTTGAGAGGACAGAGAGGCCTGAGACGCACAAGCAATGGCAGGTCTGGAACATGAGGGCAGGGTTCAGGCAGCTGCCATTGGATCGCCAACTCGTCGGTAAATTAAGAGGCAAGTTGAGACAAGTGTTCCACCGTGATTTCATGCTCGATGAAGATGGAAATTGGATGCTATAA 999 0.4535 MSPNTCVILELTTCINLYSLLPLLCESKFLLLSRAILSAARGTANKLLKQIRQHSSSTGSGSQRLAHCFANALEACLAGTGSQIYSALSSKRTSSADMIKACQIFRHLLWLPMVFLYLSSLQPNWWDPPKLRITGIDLPQSSLRPAESPRDWAAPREKWETIKLEDLKIKKDELVAVNCQKRFKNFLDETVVVNSPRDTVLMLIRKANPRMFVQTIVNGCYNAPFFVTRFREALFHYSSMFDMLDTNADGEDPMRFLFEKEFLVKDVTNIIACEGFERTERPETHKQWQVWNMRAGFRQLPLDRQLVGKLRGKLRQVFHRDFMLDEDGNWML 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1232 332 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 33 108 IPR005202 -
Lele10g1232 332 Pfam GRAS domain family 34 108 IPR005202 -
Lele10g1232 332 Pfam GRAS domain family 157 331 IPR005202 -
Lele10g1232 332 ProSiteProfiles GRAS family profile. 16 332 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1232 Lele-ChrLele10 23393162 23394428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1232 29 332 GRAS Transcription Factor Family AT1G07530 48.179 1.46e-107 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele10g1232 GRAS 3.9e-41 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1232 10 23393162 23394428 Lele11g1260 11 19549543 19556517 hybridization
Lele10g1232 10 23393162 23394428 Lele12g0062 12 558817 561351 hybridization