Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1229 ATGTTATGTATTTGTCAAGAGCTCGCTGAATCGATAGAATCGGAGAATCGAAAGAAAAGGAAAAGAGAAAGTGATGCTGCTGCTATGGCATTACAAAAACAACAAGTGTTTCGAGACATTTGCTTGCTTGAGGGTAAAGAGAGTAATGAGTTTGTCGTTTTGCCTGACAAGCTTGTCCCTGACTATGTGGTCAAAGTGGCTTTAACTTGGATATATAATTTGTGTTGTCTTTTCCTCTTTCCCCAGTTCTCCAGTGATTCCCAGATGGAGGACTCTGTTCCGGAAAGCCAGTGTATTTGTGACAGGGCATGTGAAATGAATGGATATGGTTCTTCTTCCGCTATCGCAATGCAAAGGCCAAGGGTTCCGATTAGATGGTGGAGACAGGGTCTTCAACTAGATCATCCATCCATAACGAGTATACATTCTCGGTATTCCCCATTATGCCCTTGTGGGGCGCAAACACTCCCTCCCGACACCTCCATAAGTACTCCACCCTCTCCTTCCCACAAGCCACAGATAGCCAGTCGTCTCTCATCCCTAAATCTCTCCCTCTTTCTCTTCCGCTTCACTTACCGTTACATGGGTATGGCTTCTCTGGTCTTCATTTCATTTCTCATCTCCTTTGCCTTCACCGTCGAGGCTAGAATCCCGGGGGTTTACTCCGGCGGCTCTTGGCAGAGTGCTCATGCCACCTTCTATGGAGGATCCGATGCTTCCGGCACTATGGGTGGAGCTTGTGGATACGGTAACCTCTACAGCCAGGGGTACGGCGTGAACACGGCGGCGCTGAGCACCGCACTGTTCAACAATGGGCTGAGCTGCGGGGCGTGCTTCGAGATAAAGTGCGCAAATGACAAACAATGGTGTCACTCTGGAAGCCCATCCATCTTCATCACGGCCACTAACTTCTGCCCGCCCAACTACGCTCTTCCCAACGACAATGGCGGCTGGTGTAACCCTCCTCGCCCCCACTTTGACCTCGCCATGCCCATGTTCCTCAAGATTGCCGAGTACCGTGCCGGAATCGTCCCCGTCGACTACCGCCGGATTCCATGCAGGAAGCAGGGAGGAATAAGGTTCACCATCAACGGCTTCCGTTACTTCAATCTGATGCTAATCAGCAACGTGGCAGGTGCAGGGGACATAGTGCGGGCATACGTGAAGGGATCGAGAACGGAGTGGATGCCGCTGAGCCGAAACTGGGGTCAAAACTGGCAATCGAACGCAGTATTGGTGGGAGAATCATTGTCGTTTAGGGTGACGGGCAGTGACAGGCGCACTTCCACCTCCTGGAACATCGTCCCTTCCAATTGGCAATTCGGTCAAACTTTCACCGGCAAGAACTTCCGCGTTTGA 1359 0.5114 MLCICQELAESIESENRKKRKRESDAAAMALQKQQVFRDICLLEGKESNEFVVLPDKLVPDYVVKVALTWIYNLCCLFLFPQFSSDSQMEDSVPESQCICDRACEMNGYGSSSAIAMQRPRVPIRWWRQGLQLDHPSITSIHSRYSPLCPCGAQTLPPDTSISTPPSPSHKPQIASRLSSLNLSLFLFRFTYRYMGMASLVFISFLISFAFTVEARIPGVYSGGSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVDYRRIPCRKQGGIRFTINGFRYFNLMLISNVAGAGDIVRAYVKGSRTEWMPLSRNWGQNWQSNAVLVGESLSFRVTGSDRRTSTSWNIVPSNWQFGQTFTGKNFRV 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1229 452 Pfam Lytic transglycolase 261 348 IPR009009 -
Lele10g1229 452 PRINTS Expansin/Lol pI family signature 433 447 IPR007118 GO:0005576
Lele10g1229 452 PRINTS Expansin/Lol pI family signature 265 283 IPR007118 GO:0005576
Lele10g1229 452 PRINTS Expansin/Lol pI family signature 341 357 IPR007118 GO:0005576
Lele10g1229 452 PRINTS Expansin/Lol pI family signature 395 409 IPR007118 GO:0005576
Lele10g1229 452 PRINTS Expansin/Lol pI family signature 243 261 IPR007118 GO:0005576
Lele10g1229 452 PRINTS Expansin/Lol pI family signature 225 240 IPR007118 GO:0005576
Lele10g1229 452 Gene3D - 214 354 IPR036908 -
Lele10g1229 452 SMART dpbb_1 261 348 IPR007112 -
Lele10g1229 452 FunFam Expansin 215 354 - -
Lele10g1229 452 SUPERFAMILY PHL pollen allergen 355 447 IPR036749 -
Lele10g1229 452 SUPERFAMILY Barwin-like endoglucanases 225 376 IPR036908 -
Lele10g1229 452 Gene3D - 358 450 IPR036749 -
Lele10g1229 452 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 244 358 IPR007112 -
Lele10g1229 452 Pfam Expansin C-terminal domain 359 436 IPR007117 -
Lele10g1229 452 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 368 447 IPR007117 -
Lele10g1229 452 FunFam Expansin 358 450 - -
Lele10g1229 452 PRINTS Expansin signature 316 333 IPR002963 GO:0009664
Lele10g1229 452 PRINTS Expansin signature 404 425 IPR002963 GO:0009664
Lele10g1229 452 PRINTS Expansin signature 433 449 IPR002963 GO:0009664
Lele10g1229 452 PRINTS Expansin signature 369 390 IPR002963 GO:0009664
Lele10g1229 452 PRINTS Expansin signature 333 346 IPR002963 GO:0009664
Lele10g1229 452 PRINTS Expansin signature 357 369 IPR002963 GO:0009664
Lele10g1229 452 PRINTS Expansin signature 256 270 IPR002963 GO:0009664
Lele10g1229 452 PRINTS Expansin signature 297 307 IPR002963 GO:0009664
Lele10g1229 452 PRINTS Expansin signature 283 294 IPR002963 GO:0009664
Lele10g1229 452 PANTHER EXPANSIN-A15 209 450 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1229 Lele-ChrLele10 23374446 23378886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1229 199 452 Expansin Gene Family AT2G39700 84.252 3.37e-162 456