Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1227 ATGAAGTGCTTCCATTTCTCAAACGGGGGACCAGATCCCCGAGAAGACGATGACTCTGTTACCTCCAAGGCTTCCAAGCTCTCCTGGGCTCGCTCACTCAGCGTCGCTTCTTCTACCTTGGGCTCAAGGAGGTCTGAATTTGAGTCTGATTCAAAGGACTTCTCCGATACAGTTGAGTTCCATAAATTCTTGTCTCAGCGGCGAGCTAATGATTTGCGCGTTTTTTCCTTCTCTGAGCTTAAATTGGCAACTCGTGGATTCAGTAGAGCCCTTTTGATTGGAGAGGGAGGGTTTGGTTGTGTCTACAAAGGGGTTCTCAGGGTACCCAGCGAGCATGCAAATGACGGTTCTCTTTCCAATATGGATGTTGCGATCAAGCAATTGAACCGTAATGGACCCCAGGGCCACAGGGAATGGATCAATGAAGTAAACTTGTTGGGTGTAATCAAACATAAAAATCTTGTGAAGCTAGTGGGATATTGCGCTGAAGATGATGAGAGGGGAATTCAGCGGCTTCTAGTCTATGAGCTTTTGCAGAATAAAAGCTTGGAAGATCATCTTTTGGGTCGAGTGCCATCAACACTTACATGGATAGCAAGATTGAAAATTGCTCAAGATGCTGCCTGTGGATTGGCATATCTACATGAAGAAATGGATTTTCAGCTTATTTTTCGGGATTTTAAGACATCCAATGTCCTGCTGGATGAGGACTTTAATGCGAAGCTTTCTGATTTCGGACTTGCTAGGCAAGGACCCTCAGAAGGATTTGGACATGTTTCAACATCTGTTGTGGGGACTATTGGTTATGCTGCCCCAGAGTATGTTCATACTGGTAAGTTAACTGCTAAGAGTGATGTTTGGAGCTTTGGTGTAGTTCTTTATGAACTTATCACTGGGAGGCGAGCTGTTGAGAGAAACCTACCGAGAAATGAACAAAAGCTTCTGGAATGGGTAAGAAATTATGTTTCTGACCCTAGAAAGTTCCATCTTCTGGTAGACCCACGACTTGAAGGACAATATTGCATCAAATCAGCTCAAAAACTTGCAACCCTAGCAAACAAATGTCTTACAAAGCAGCCGAAGAACCGTCCTAAAATGAGTGAAGTGGTTGAGATTCTTGGAAGCATAATTAACGAGACAATTTCTCAGTTTGAATGCAGTGTTCAAGCTGTTTCAATTGAAGAAGAAAAAGAAGAGAAGTTGTCTGAAGAGGACACTGAATCTGGGGCGGCTAAACAAGGGAATAATTATCTGAAGAAGGCCTTGGACTTCAGAGAAATGATGAGTTTAAGAAACAAGTCCATTAGAAGGTTGGATTGGAAAAATTGGGCGCCTGGTTTGGTGCGAACTTGGTGA 1356 0.4351 MKCFHFSNGGPDPREDDDSVTSKASKLSWARSLSVASSTLGSRRSEFESDSKDFSDTVEFHKFLSQRRANDLRVFSFSELKLATRGFSRALLIGEGGFGCVYKGVLRVPSEHANDGSLSNMDVAIKQLNRNGPQGHREWINEVNLLGVIKHKNLVKLVGYCAEDDERGIQRLLVYELLQNKSLEDHLLGRVPSTLTWIARLKIAQDAACGLAYLHEEMDFQLIFRDFKTSNVLLDEDFNAKLSDFGLARQGPSEGFGHVSTSVVGTIGYAAPEYVHTGKLTAKSDVWSFGVVLYELITGRRAVERNLPRNEQKLLEWVRNYVSDPRKFHLLVDPRLEGQYCIKSAQKLATLANKCLTKQPKNRPKMSEVVEILGSIINETISQFECSVQAVSIEEEKEEKLSEEDTESGAAKQGNNYLKKALDFREMMSLRNKSIRRLDWKNWAPGLVRTW 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1227 451 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 178 387 - -
Lele10g1227 451 FunFam Serine/threonine-protein kinase BIK1 55 177 - -
Lele10g1227 451 PANTHER OS01G0588500 PROTEIN-RELATED 47 375 - -
Lele10g1227 451 ProSiteProfiles Protein kinase domain profile. 87 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele10g1227 451 Gene3D Phosphorylase Kinase; domain 1 67 177 - -
Lele10g1227 451 MobiDBLite consensus disorder prediction 1 21 - -
Lele10g1227 451 SUPERFAMILY Protein kinase-like (PK-like) 69 373 IPR011009 -
Lele10g1227 451 Pfam Protein tyrosine and serine/threonine kinase 93 373 IPR001245 GO:0004672|GO:0006468
Lele10g1227 451 ProSitePatterns Protein kinases ATP-binding region signature. 93 126 IPR017441 GO:0005524
Lele10g1227 451 Gene3D Transferase(Phosphotransferase) domain 1 178 400 - -
Lele10g1227 451 CDD STKc_IRAK 93 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1227 Lele-ChrLele10 23354295 23356713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1227 73 374 Glycoside Hydrolase AT3G07070 50.329 1.98e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele10g1227 PK_Tyr_Ser-Thr 2.7e-46 CL0016