Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1226 ATGATGATGCCCATGGTCATGGGACAATTGGCATATCGGTTTACTGGTATTGGTACGCGATTAATTCTCCTTTCTGGCATGGGTGTTTGTTTGAGCGCCCAAATTAAAGCAGAGAGCCCATGCAACACAGGGTTAAATTCAAAATATGTGAGTAGTGACGGAAAGGATGGTAGCAGCACGGGAAGCAAGGTGTCGGCGGTGTCAGTTCCTCAGACTCCGAGGAGTGAGGGAGAGATTTTGCAGTCATCTAATTTAAAGAGTTTCACTTTATCAGAATTGAAGGCGGCCACCAGAAATTTCTGTCTAGATAGTGTGTTAGGAGAAGGTGGCTTTGGATCAGTGTATAAAGGGTGGATCGATGAGCACTCTTTGATTGCTGCCAAACCTGGGACCGGCATGGTTATTGCTGTCAAAAGACTTAATCAAGATGGTTTTCAAGGTCACAAGGAGTGGTTGGCGGAAGTGAACTACCTTGGACAGCTTTCTCATCCTCATCTGGTGAAATTAGTTGGTTATTGCCTGGAAGATGAACATCGTCTTCTGGTGTATGAATTCATGCCTCGAGGCAGCTTAGAGAATCATTTGTTCAGAAGAGGTTCATACTTCCAACCTGTGTCGTGGAGCCTGCGGATGAAGGTTGCTCTTGGTGCTGCAAAAGGCCTTGCGTTTCTTCACAGCGGCAACGTCAAAGTGATATACCGGGATTTCAAGACTTCTAATGTCTTACTGGATTCAAAATATAATGCAAAGCTTTCTGATTTTGGGCTGGCAAAAGATGGACCAACGGGTGACAAGAGTCATGTCTCAACCAGGGTCATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCCACAGGCCACCTGACGGCGAAGAGCGATGTGTATAGTTTTGGAGTTGTGCTACTGGAAATGTTATCGGGGCGACGAGCTGTTGATAAGAATAGGCCACGTGGTCAGCACAATTTGGTGGAATGGGCTAAGCCATGTCTGACAAACAAACGGAAGATCTTTCGCATTATGGACAGTCGTCTCGAAGGTCAGTATTCGATCGATGAGGCTCATAAGACGGCAATGCTAGCGCTGCGATGCCTCTCCGGCGAGCCCAAGATAAGGCCTGACATGGACGAGGTTGTCAAAGCTCTGGAGCAGCTCCAAGTCTCCGTTGATGAAAATGGAAGCCATCATAACTCTCGGTCTCGTGCCCGGAGAAGAAGTGCCGATGACTTTAACAGTCGGACGGCTTATCCCAGGCCCTCTGCTTCTCCACTCTACGCTTGA 1281 0.4762 MMMPMVMGQLAYRFTGIGTRLILLSGMGVCLSAQIKAESPCNTGLNSKYVSSDGKDGSSTGSKVSAVSVPQTPRSEGEILQSSNLKSFTLSELKAATRNFCLDSVLGEGGFGSVYKGWIDEHSLIAAKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLSHPHLVKLVGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPVSWSLRMKVALGAAKGLAFLHSGNVKVIYRDFKTSNVLLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAVDKNRPRGQHNLVEWAKPCLTNKRKIFRIMDSRLEGQYSIDEAHKTAMLALRCLSGEPKIRPDMDEVVKALEQLQVSVDENGSHHNSRSRARRRSADDFNSRTAYPRPSASPLYA 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1226 426 PANTHER OS01G0588500 PROTEIN-RELATED 66 386 - -
Lele10g1226 426 Gene3D Phosphorylase Kinase; domain 1 75 185 - -
Lele10g1226 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Lele10g1226 426 FunFam Probable serine/threonine-protein kinase PBL8 186 402 - -
Lele10g1226 426 MobiDBLite consensus disorder prediction 394 411 - -
Lele10g1226 426 SUPERFAMILY Protein kinase-like (PK-like) 74 382 IPR011009 -
Lele10g1226 426 MobiDBLite consensus disorder prediction 389 426 - -
Lele10g1226 426 CDD STKc_IRAK 106 385 - -
Lele10g1226 426 Gene3D Transferase(Phosphotransferase) domain 1 186 410 - -
Lele10g1226 426 ProSiteProfiles Protein kinase domain profile. 100 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele10g1226 426 MobiDBLite consensus disorder prediction 52 73 - -
Lele10g1226 426 FunFam Serine/threonine-protein kinase BIK1 67 185 - -
Lele10g1226 426 ProSitePatterns Protein kinases ATP-binding region signature. 106 138 IPR017441 GO:0005524
Lele10g1226 426 Pfam Protein tyrosine and serine/threonine kinase 102 382 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1226 Lele-ChrLele10 23347575 23352821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1226 78 390 Glycoside Hydrolase AT3G07070 49.682 8.71e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele10g1226 PK_Tyr_Ser-Thr 1.6e-45 CL0016