Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1211 ATGAATGCAACGCTCGTGTCTGCGATAGCCATGAAGAGAGGAAGAGATGAATTAGGCGAAACAGAAGGCTTAAACATGGTAAAGTGTTTGATGTTACTGTCGAGAGTTGGGGTAAGTAACCCTTCATCAAATGGTAGTGATGTTGGTTTTAAGTGCAAGACTTGTAACAGAGTGTTCCCTTCTTTTCAAGCTCTTGGAGGGCACCGGGCCAGCCACAAGAAGCCTAAGCTACTCATGCTGCCTTGGAAGCTCAACAAGATGCACCCTTGTCCCATCTGTGGAGTCGAGTTTGGAATCGGACAAGCACTCGGAGGTCACATGAGAAAGCACAGAGCTCCTGTTCATAAGAATAAGTTTGATTTATGCTTGGACTTGAACTTGACGCCTTTAGAAAATGATCATCTCAACCTCAACTTGACGACAACACCCCTCGTTAATTCTTTTGTTTGA 450 0.4467 MNATLVSAIAMKRGRDELGETEGLNMVKCLMLLSRVGVSNPSSNGSDVGFKCKTCNRVFPSFQALGGHRASHKKPKLLMLPWKLNKMHPCPICGVEFGIGQALGGHMRKHRAPVHKNKFDLCLDLNLTPLENDHLNLNLTTTPLVNSFV 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1211 149 Gene3D Classic Zinc Finger 49 110 - -
Lele10g1211 149 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Lele10g1211 149 Pfam C2H2-type zinc finger 88 113 - -
Lele10g1211 149 Pfam C2H2-type zinc finger 50 75 - -
Lele10g1211 149 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Lele10g1211 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Lele10g1211 149 SUPERFAMILY beta-beta-alpha zinc fingers 50 110 IPR036236 -
Lele10g1211 149 SMART c2h2final6 50 72 IPR013087 -
Lele10g1211 149 SMART c2h2final6 88 110 IPR013087 -
Lele10g1211 149 PANTHER ZINC FINGER PROTEIN ZAT5 22 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1211 Lele-ChrLele10 23247346 23248119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1211 11 133 C2H2 Transcription Factor Family AT3G53600 46.154 2.67e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele10g1211 zf-C2H2_6 2.7e-09 CL0361