Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1205 ATGTCTTCAAACTCCACGAAGCCTGATGTGCCATTGGAATGGAATGTACGACAGACAACTTCACTAATTATTGTCTGTATCGTTTTCCTGTTACTGAGTTACTACATCGTATTGAAGCGTATTTGTTGTTGTGGGAATTCTTCTGGGAACCAAGCTAGGAGGAGCCGACTTCTAGAAGAATCCATTCAAGATGATCCTTCTCTACAGTCTCAGAGCCATGGCTTGGAGTTGTCTGTAATACATTCTCTGCCCAAGTCCATGTTTAAGAAAAGTGAAGGGGAAGAGAAGCCAAACAGCGCAGATTGTGCCATATGCTTAGGTGAGCTTGAAGAAGGGGAATGGCTCAAACATCTTCCGAACTGCAACCATGTATTCCATGTTTCCTGTATTGACTATTGGCTTCGGTCGAGCTCGAATTGCCCTCTTTGCAGATCTCATGTTCTCCAGAATCCTCTCGCTCTAAGGCTCTAA 471 0.4416 MSSNSTKPDVPLEWNVRQTTSLIIVCIVFLLLSYYIVLKRICCCGNSSGNQARRSRLLEESIQDDPSLQSQSHGLELSVIHSLPKSMFKKSEGEEKPNSADCAICLGELEEGEWLKHLPNCNHVFHVSCIDYWLRSSSNCPLCRSHVLQNPLALRL 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1205 156 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Lele10g1205 156 SUPERFAMILY RING/U-box 94 149 - -
Lele10g1205 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 149 IPR013083 -
Lele10g1205 156 PANTHER RING-H2 FINGER PROTEIN ATL16 24 148 IPR044600 GO:0016567|GO:0016740
Lele10g1205 156 Pfam Ring finger domain 101 144 IPR001841 -
Lele10g1205 156 SMART ring_2 102 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1205 Lele-ChrLele10 23214643 23215113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1205 24 147 C3H Transcription Factor Family AT1G04360 41.353 5.36e-24 94.4