Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1196 ATGCAAAACAGTGGGCGGTCACTGTCAGAAAGTGCATTGAGGAGCGAAAGTAGTATGATCATCGAAGGAATGAGCAGAGCGTATCCTTACAGCCCGGAGGAGAAGAAGGTGAGGATTGAGAGATACAGAATCAAGAGACATAAGAGGAACTTCAAGAAGAAAATTAAGTATGAATGCAGGAAGACATTGGCAGAGAACAGGCCGCGCATCAGAGGAAGATTTGCAAAGAGCGAAGAAAGTGACGAGAAGAGTCATATGATTGAGAATGAGAGTGAAGAGGAAGATGAGAATTGGGACAGTTTTTTTGAAAACTTGGTAGCTGCAAATCTTGTTCACGAACCATGA 345 0.4319 MQNSGRSLSESALRSESSMIIEGMSRAYPYSPEEKKVRIERYRIKRHKRNFKKKIKYECRKTLAENRPRIRGRFAKSEESDEKSHMIENESEEEDENWDSFFENLVAANLVHEP 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1196 114 Pfam CCT motif 37 77 IPR010402 GO:0005515
Lele10g1196 114 ProSiteProfiles CCT domain profile. 35 77 IPR010402 GO:0005515
Lele10g1196 114 MobiDBLite consensus disorder prediction 70 87 - -
Lele10g1196 114 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 90 IPR045281 GO:0009909
Lele10g1196 114 MobiDBLite consensus disorder prediction 70 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1196 Lele-ChrLele10 23128797 23129281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1196 23 87 C2C2-CO-like Transcription Factor Family AT5G24930 46.154 1.93e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele10g1196 CCT 4.1e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1196 10 23128797 23129281 Lele11g1220 11 19309342 19310226 hybridization
Lele10g1196 10 23128797 23129281 Lele12g0100 12 840542 841029 hybridization