Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1175 ATGGATTTAGTCAATAGTTGCAAGGAAAAGTTGACATATTTTCGTATAAAAGAGCTCAAAGATGTACTCACCCAGTTAGGCCTGTCAAAACAGGGAAAGAAGCAGGATCTTGTTGATCGGATATTAGCCATTGTCTCAGATGAACAAGTTTCCAAATTGTGGGCTAAAAAGAATGCAGTTGGAAAAGATCAGGTGGCAAAATTAGTGGATGACACATATAGAAAGATGCAGATATCTGGAGCAACTGAGCTGGCATCAAAGGGTATGTCAGATAGTAGTAATGTGAAAATTAAAGGTGAAATTGAAGATTCCTTGCAGTCAGTTACAAAGATTCGCTGTCTCTGTGGAAGTTCTTTGGAAACAGAGGCATTGATCAAGTGTGAGGATGCAAGATGTCAAGTGTGGCAACACATGAGTTGTGTTTTAATTCCAGACAAACCTACGGAAGGCAACCCACCAGTTCCTGATAAATTCTATTGTGAGATCTGTCGTCTCAGTCGTGCTGACCCTTTTTGGGTTCCAGTGGCACATCCTTTGTTTCCTTTGAAGTTGACCACAACTGATGTTCCAACTGATGGCACTAACCCTGTGCAGAGTGTGGAGAGATCATTTCAACTTACAAGAGCAGACAAGGACTTGGTGTCTAAACCAGAAATTGATGTTCAGGCTTGGTGCATGCTTCTGAATGACAAGGTCCCATTCAGGATGCAGTGGCCTCAATATACTGATCTACAGGTCAATGGTGTACCTGTTCGTGCCATCAACAGACCTGGTTCACAATTACTTGGGGCTAATGGTCGAGATGATGGTCCAATTATCACACCATATACAAAAGATGGAATAAATAAGATTTCCTTAACTGGGTGTGATTCTCGCCCTTTCTGTTTAGGGGTTCGTATTGTGAGAAGGCGGACCATGCAACAGATCCTAAGCATAATTCCAAAAGAGTCTGATGGTGAGCCTTTTGAAGATGCTCTTGCACGTGTCTGCCGATGTGTTGGTGGTGGTAATGTAGATGATAATGCTGATAGTGACAGTGATCTAGAAGTTGTTTCAGATACCTTTAGCATCAACATCCGCTGTCCAATGAGTGGTTCAAGGATGAAGGTTGCTGGAAGATTCAAGCCTTGTGTTCACATTGGTTGTTTTGATCTTGAAGTGTTTGTGGAAATGAATCAGCGGTCGAGGAAGTGGCAATGTCCTATCTGTCTCAAAAATTATACATTGGAGAATATCATTATAGACCCTTACTTCAACCGTATCACATCTAAGATGATAAATTGCGGTGAAGATGTGACAGAGGTTGAAGTGAAGCCTGACGGTTCTTGGCGTGTCAAGGCTAAGAGTGAAATTGAACGCCGAGATTTGGGTAATCTTGCACAATGGCACTTTCCTGATGGATCACTTTGTGTTTCTACTGATGAAGAAGTCAATAGAGTGGATGCATTAAAGCAGATAAAACAGGAGGGTGTTTCTGACAGTCCTACTGGTTTGAAACTTGGCATTAGGAAGAATCACGATGGAGTTTGGGTTTTCAGCAAACCCAATGGCACCAATACATCATCAGGCAATAGATTGAAAGAGAACTTTGGTAATCATGAACAGTTGGTTATTCCAATGAGCAGCAGTGCCACTGGGAGTGGTCGTGAGGGTGATGACCCTAGTGTAAATCAGGGTGGTGGTGAACATGTTGATTTCTCTAACAATGGGACAGAAATGGATTATTTCTATCTTAATAATGTTGATTCAGCATATGGGTTTGCAGAAAATAACGCTACTGCTCCAACTGGGGATGCTGAAGTTATTGTTCTAAGCGATTCTGAGGAAGAGAATGGCATGTTGGTATCTTCTGCAAATGACTACAAGAATAATCGAACTGATGCTGTTGGTGTTGGTTTCCCTGTGCCACCTTCTGGGATTGCTGATTCATTTGCAGAAGATCCCACCACCCTTGGTGGCTTGGGACTTTTTAGTACTAATGAAGATGAGTTTGATATGCCTTCCCTTTGGCAATTGCCTTCTGGAACTCAGGCAGGTTCAGGATTTCAGTTATTCACTTCTGATGCAGATGTGTCGGATGCATTGGTCCATCTGCAGCATGGTCCTGTTGATTGTTCCACATCACTGAATGGCTATGCATTGGCACCAGACACTACTTTAGGATCTAGCACTCTCATGCCAGATGCCTCTGCTGGTCGGTCTGATGCTGATTTAAATGGTGGTTTAGTCGACAATCCACTGGCATTTGCCGGAGATGATCCCTCACTCCAAATATTTCTCCCCACTAGACCTGCAGAATCATCTGGGCAGCATGAATTGAGAGACCAGGCAGATGTGTCTAATGGTGTCTGCAATGAGGATTGGATTTCTCTTCGGCTTGGAGGTGGTGCTAGTGGTACTAACAGCCATGCTACGACTCCAAATGATCTGAATTCTAGACCACAAATTCCGTCCACAGATGCTATGGATGATACTGCTTCTTTGCTTCTTGGTATGAATGATGCTAGATCTGACAATGCAAGTAGACAAAGGTCGGATAGCCCTTTCTCATTTCCCCGCCAAAAACGTTCAGTAAGGCCCCGCCTGTATCTCTCTATTGATTCGGATTCAGAGTAG 2616 0.432 MDLVNSCKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILAIVSDEQVSKLWAKKNAVGKDQVAKLVDDTYRKMQISGATELASKGMSDSSNVKIKGEIEDSLQSVTKIRCLCGSSLETEALIKCEDARCQVWQHMSCVLIPDKPTEGNPPVPDKFYCEICRLSRADPFWVPVAHPLFPLKLTTTDVPTDGTNPVQSVERSFQLTRADKDLVSKPEIDVQAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDSRPFCLGVRIVRRRTMQQILSIIPKESDGEPFEDALARVCRCVGGGNVDDNADSDSDLEVVSDTFSINIRCPMSGSRMKVAGRFKPCVHIGCFDLEVFVEMNQRSRKWQCPICLKNYTLENIIIDPYFNRITSKMINCGEDVTEVEVKPDGSWRVKAKSEIERRDLGNLAQWHFPDGSLCVSTDEEVNRVDALKQIKQEGVSDSPTGLKLGIRKNHDGVWVFSKPNGTNTSSGNRLKENFGNHEQLVIPMSSSATGSGREGDDPSVNQGGGEHVDFSNNGTEMDYFYLNNVDSAYGFAENNATAPTGDAEVIVLSDSEEENGMLVSSANDYKNNRTDAVGVGFPVPPSGIADSFAEDPTTLGGLGLFSTNEDEFDMPSLWQLPSGTQAGSGFQLFTSDADVSDALVHLQHGPVDCSTSLNGYALAPDTTLGSSTLMPDASAGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSGQHELRDQADVSNGVCNEDWISLRLGGGASGTNSHATTPNDLNSRPQIPSTDAMDDTASLLLGMNDARSDNASRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1175 871 ProSitePatterns Zinc finger PHD-type signature. 113 163 IPR019786 -
Lele10g1175 871 Gene3D SAP domain 1 61 IPR036361 -
Lele10g1175 871 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Lele10g1175 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 445 IPR013083 -
Lele10g1175 871 SUPERFAMILY FYVE/PHD zinc finger 108 167 IPR011011 -
Lele10g1175 871 MobiDBLite consensus disorder prediction 797 821 - -
Lele10g1175 871 MobiDBLite consensus disorder prediction 834 871 - -
Lele10g1175 871 Pfam MIZ/SP-RING zinc finger 357 405 IPR004181 GO:0008270
Lele10g1175 871 Pfam SAP domain 14 42 IPR003034 -
Lele10g1175 871 SMART sap_9 11 45 IPR003034 -
Lele10g1175 871 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Lele10g1175 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 169 IPR013083 -
Lele10g1175 871 SMART PHD_3 112 164 IPR001965 -
Lele10g1175 871 MobiDBLite consensus disorder prediction 834 852 - -
Lele10g1175 871 ProSiteProfiles Zinc finger SP-RING-type profile. 344 427 IPR004181 GO:0008270
Lele10g1175 871 SUPERFAMILY SAP domain 1 63 IPR036361 -
Lele10g1175 871 MobiDBLite consensus disorder prediction 541 563 - -
Lele10g1175 871 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 618 - -
Lele10g1175 871 CDD PHD_Bye1p_SIZ1_like 112 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1175 Lele-ChrLele10 22939396 22948718 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele10g1175 zf-MIZ 5.6e-19 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1175 10 22939396 22948718 Lele29g0206 29 1190282 1195936 CCT
Lele10g1175 10 22939396 22948718 Lele30g1202 30 14793299 14797217 CCT
Lele10g1175 10 22939396 22948718 Lele31g1345 31 19376366 19380596 CCT
Lele10g1175 10 22939396 22948718 Lele32g0193 32 1166703 1170611 CCT
Lele29g0199 29 1157548 1165333 Lele10g1175 10 22939396 22948718 CCT
Lele30g1206 30 14819218 14828754 Lele10g1175 10 22939396 22948718 CCT
Lele10g1175 10 22939396 22948718 Lele11g1199 11 19132395 19141930 hybridization
Lele10g1175 10 22939396 22948718 Lele12g0121 12 974398 983394 hybridization