Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1173 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAGAATGCCTTCTTCGATGGACACTGTGGTGAGCAAGGCGCTTGTGCTTCATGTTTCTCTTCTTCCACTTCTTCATCTTCCAATTCGCCTTCTCCTCGTGTTTCTTCTTCTTATCTTGAACTCTGGCATGCTTGTGCTGGCCCTCTCACCGCCCTCCCTAACAAAGGAAATGTAATCGTCTACTTTCCCCAAGGTCATCTTGAACAGCTTGCCTCTTTCTCTCCTTTCTCCCCCATGGACATGCCCACCTATGACCTTCAGCCGCAAATCTTCTGCAGGGTCGTCAATGTCCAGCTTCTTGCCAACAAGGAGAATGATGAGGTTTATACGCAGGTTACTTTGCTTCCCCAGGCAGAGTTAGCAGGGGTGCACTTGGAGGGCCAAGAGCTTGAGAAATTGGGAGCATATGCGGATGAAAATGGAGGATTACCTGCAAAATCAACCCCTCACATGTTCTGTAAAACGCTTACTGCTTCTGATACTAGCACTCATGGGGGTTTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGCTTTCCTCCTCTGGATTATAAGCAGCAAAGACCCTCCCAAGAGCTTGTTGCAAAAGACTTGCATGGGGTAGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGACGGCATCTTCTCACAACGGGCTGGAGTATTTTTGTCAGCCAAAAGAATCTTGTTTCTGGCGATGCAGTACTCTTTCTGAGGGGTGAAAGTGGAGAACTGAGATTGGGAATCAGGAGATCTGTTCGGCCGAGAAATGATCTTCCCGAGTCGATTAATGGTGATCAGAATTGCTGTCCCAATTTCCTGTCATCAGTGGCTAATGCTATATCCACCAAAAGTGTGTTTCATGTCTTCCACAGCCCAAGGGCAAGTCATGCAGAGTTTGTTGTCCCCTACAAGAAATATGTCAAAAGCATCAAGAATCCAATGACCATTGGGACAAGATTTAAGATGAAATTTGAAATGGAGGAATCTCCCGAAAGAAGGTGTAATGGTGGTATAGTGACTGGAATGCGTGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTAAGATGGGATGAGGATATTGCTACTAATCATCAAGATCGAATTTCTCCATGGGAGATTGAGCCTTCAGTTTCTCTCCCACCCTTGAGCATTCAGTCATCCCCAAGACTAAAGAAATTGCGGACAGGTCTGCAAGCTGCCACATCAAGTCACCTCATGACTGGTGGCGGTGCATTTATGGACTTTGAGGAGTCTGTAATATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAGTTTTTGCATCATACTATTTTGGGCGTGATGCAGTGACCAAAAACCAGCCAGATTTTGAGATGAGTCCTCTTGGTCATCCAAATCTTTCATCCACTGGATTAAGAAAAGCTACTGCTGCTGAACTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTTGCAGAGACTAATAAGTTTCTGAGGGTCTTGCAAGGTCAAGAAACATGTCCATTGCAATCCCTGAAAGGAAAAGCTGATTTTAACCTTGGAGCTTGGGGCAAACCCAATTCCAGCTGCACAACTTTCAACCAGCTTCAGCCATCCAAACCCAACTTCAACGCTTTAGGATCAGAAGGCCTTCGAACTGCTTATTTTCCTTTCGGTGACATTCACCGAGCTGGTCAAATTCAAAGTAGCCTGTTGTGCTCTAAACCTGCAAATTTTGAGAGAGAGAATCTCCACACTCCTTCCACTCAGGCAGAGCTCTCGACAAAGGAAGTTGGACGGTTGGATCTCTCGAACAAGGATAAGCTGCAGGAGAGTTTTTCTGCTGTTGCTTCTTCTTTAGGAGCAAGTCTAATGATTCCAAATGATGAAAATTTTGAGGGGAAGGTAAATGGCTGTAAACTATTTGGGTTTCCCTTATCTGGGGAAGGCAACTCTCAGAATTTACAGAACTCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTCGGAAGAGCCATTGATCTCTCAAGACTTAGCAGCTACAATGATCTGTTGAGTGAACTTGAGCGACTCTTTGGCATGGAAGGCCTTGTAAAGGATCCTAATAAAGGATGGAGAGTCCTCTACACCGATAGCGAAAACGACATAATGGTCGTAGGAGATGATCCATGGCATGAGTTCTGCAGTGTGGTGTCTAAGATCCATATATATACCCAAGAAGAAGTGGAGAAGATGACAATTGGGATGATCACTGATGATACCCAGAGCTGTTTGGAACAGTCAACAGGAGTAATGGAGGCTTCCAAGTCCTCATCTGTGGGCCAGCCAGATTCTTCTCCAGCAGAAGTATAG 2406 0.453 MEIDLNHAVTEVEKNAFFDGHCGEQGACASCFSSSTSSSSNSPSPRVSSSYLELWHACAGPLTALPNKGNVIVYFPQGHLEQLASFSPFSPMDMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGVHLEGQELEKLGAYADENGGLPAKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGESGELRLGIRRSVRPRNDLPESINGDQNCCPNFLSSVANAISTKSVFHVFHSPRASHAEFVVPYKKYVKSIKNPMTIGTRFKMKFEMEESPERRCNGGIVTGMRDLDPYRWPKSKWRCLMVRWDEDIATNHQDRISPWEIEPSVSLPPLSIQSSPRLKKLRTGLQAATSSHLMTGGGAFMDFEESVISPKVLQGQENTVFASYYFGRDAVTKNQPDFEMSPLGHPNLSSTGLRKATAAELMRVHPSSYAGFAETNKFLRVLQGQETCPLQSLKGKADFNLGAWGKPNSSCTTFNQLQPSKPNFNALGSEGLRTAYFPFGDIHRAGQIQSSLLCSKPANFERENLHTPSTQAELSTKEVGRLDLSNKDKLQESFSAVASSLGASLMIPNDENFEGKVNGCKLFGFPLSGEGNSQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLVKDPNKGWRVLYTDSENDIMVVGDDPWHEFCSVVSKIHIYTQEEVEKMTIGMITDDTQSCLEQSTGVMEASKSSSVGQPDSSPAEV 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1173 801 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele10g1173 801 FunFam Auxin response factor 163 267 - -
Lele10g1173 801 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Lele10g1173 801 Gene3D - 329 401 - -
Lele10g1173 801 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Lele10g1173 801 SMART B3_2 165 267 IPR003340 GO:0003677
Lele10g1173 801 ProSiteProfiles PB1 domain profile. 675 759 IPR000270 GO:0005515
Lele10g1173 801 Pfam AUX/IAA family 668 759 IPR033389 -
Lele10g1173 801 Gene3D - 671 764 - -
Lele10g1173 801 MobiDBLite consensus disorder prediction 779 801 - -
Lele10g1173 801 FunFam Auxin response factor 328 401 - -
Lele10g1173 801 Gene3D - 163 267 IPR015300 -
Lele10g1173 801 SUPERFAMILY CAD & PB1 domains 677 754 - -
Lele10g1173 801 FunFam Auxin response factor 670 764 - -
Lele10g1173 801 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 764 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele10g1173 801 SUPERFAMILY DNA-binding pseudobarrel domain 157 272 IPR015300 -
Lele10g1173 801 CDD B3_DNA 163 265 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1173 Lele-ChrLele10 22926682 22931530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1173 48 787 B3 DNA Binding Superfamily AT5G60450 59.036 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele10g1173 AUX_IAA 2.8e-07 CL0072