Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1169 ATGATGCCTGCAGATTCCCTTTCTGTTCCTTCTACCGTTAACTCCTTCATCGACCCAAACTCAAACCCTCACCCTAACTCAAATCCAGTCAAGAAAAGGAGAAATCTCCCCGGAACACCAGATCCGGATGCAGAAGTGATAGCCCTATCGCCAAAGTCACTCATGGAGACTAATCGTTTCGTATGCGAAATCTGCAATAAGGGTTTCCAGAGGGACCAGAACTTGCAGCTGCACCGCCGTGGGCACAATCTTCCGTGGAAGCTCCGGCAGAGAACCAACAAGGAAGTGAAGAAGAAGGTGTATGTTTGCCCTGAGAAGACCTGCGTGCACCACGATCCCTCCAGAGCCCTCGGAGACCTCACGGGGATCAAAAAACACTTCTGCAGAAAGCACGGCGAGAAAAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCGGTTCAATCCGATTGGAAAGCCCATAGCAAGATTTGTGGCACTCGAGAGTACACATGTGACTGTGGCACCATTTTCTCCAGGAAGGACAGCTTCATAACTCACAGAGCTTTCTGTGACGCCTTGGCCGAAGAAAGTGCTAGAAATACAACAATAACAACTGTACCTTCATCTTTTACTAACCTCAGAAGCGACCATTTGATGATGAGCATGAATAATCACCAAACACCACGAGTAATCCCTGAGATACTTCCAAGGTTTCATCCGAATCAATTTGGAGGTAATTCCGAAGGAAATTTTGGTTTGCTCAACAATTTGAATTCCCGGTTTCCGGATTTAGTCCAAGGCATGGACATGTTTGGGACATCAAGTCATCATCAGACACGACAGTGGGTTAACGTTAACCGATTCCCAGAAGCAGATTCATCAATTACAACAAGTGCCAACGTTAACATGTGTGTGTCTGGAATAGTGCCACATGGACTGAAGCAAGAACCAGAAGAAAACAGACAAGATTTGTGGCATAGTATAGGAGGTTTGTACTCGGGTCATCAGATTCAGAACCCAGAAGCAGCAGTAGGAGGAGCGAGTCACATGTCAGCCACTGCACTCTTACAGAAAGCAGCACAAATCGGATCTACAACCGCTAATAACAATGTCGTCAACAACACATCCTCCTCCTTCAACTCTATCAACCACTTCGGATTAAAGGGCTCAGCTGTTTTAAACTCCTCCAACAACAACACTAACGTTGATGACCTTCACAAAATTTTCAAGCAAACGGATAACAAGAGTACCAACCTTGGAGGAGGTAATGGGTTTCTGTTAAACGACTCCAACCCAAGATCGACGTTTGCGAGCACCGCCGTCAAGGGTTTGCGTTCAAGCTCAAATGAAGAGGAGCTAGGTTTAACCAGAGACTTTCTGGGCGTTCGAGGGGACTCGTTGAGCGGACCCTTTCTGGAGCAAGAGTTAGCCAAGTTCAATACAGCTTCAGCCTTGGACCTGAGCCAGTACGGTGCGCATCACTGA 1467 0.4697 MMPADSLSVPSTVNSFIDPNSNPHPNSNPVKKRRNLPGTPDPDAEVIALSPKSLMETNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVKKKVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYTCDCGTIFSRKDSFITHRAFCDALAEESARNTTITTVPSSFTNLRSDHLMMSMNNHQTPRVIPEILPRFHPNQFGGNSEGNFGLLNNLNSRFPDLVQGMDMFGTSSHHQTRQWVNVNRFPEADSSITTSANVNMCVSGIVPHGLKQEPEENRQDLWHSIGGLYSGHQIQNPEAAVGGASHMSATALLQKAAQIGSTTANNNVVNNTSSSFNSINHFGLKGSAVLNSSNNNTNVDDLHKIFKQTDNKSTNLGGGNGFLLNDSNPRSTFASTAVKGLRSSSNEEELGLTRDFLGVRGDSLSGPFLEQELAKFNTASALDLSQYGAHH 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1169 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Lele10g1169 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 464 IPR031140 -
Lele10g1169 488 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Lele10g1169 488 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Lele10g1169 488 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Lele10g1169 488 Gene3D Classic Zinc Finger 39 112 - -
Lele10g1169 488 Gene3D Classic Zinc Finger 129 196 - -
Lele10g1169 488 MobiDBLite consensus disorder prediction 1 43 - -
Lele10g1169 488 MobiDBLite consensus disorder prediction 7 33 - -
Lele10g1169 488 FunFam protein indeterminate-domain 12-like 39 107 - -
Lele10g1169 488 SMART c2h2final6 136 156 IPR013087 -
Lele10g1169 488 SMART c2h2final6 60 82 IPR013087 -
Lele10g1169 488 SMART c2h2final6 101 131 IPR013087 -
Lele10g1169 488 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1169 Lele-ChrLele10 22886595 22888548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1169 2 194 IDZ Gene Family AT3G50700 79.293 1.17e-115 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele10g1169 zf-C2H2 0.0049 CL0361