LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele10g1160	ATGGAGAGGACGGCCACGATGTCGTCGGCTGTTCTGGAGAGCACAATCCTGACCGGGGACGACACGGACGTGGCGTCAATGTTCTTGCCAATGAGGGAAGAGGACGAGTCGCTTTTCGTGGACCTGAGGGAGCAGCCGGAGTGCTCGATGTCATTTGCAGGGATGGCTTACATGTTTGGCGCCATATCTTCGGCCATCAAAGCCACCATGGGTTACAACCAGAAGCAGCTCGCTCACCTAGCCACAGCCAAGGACTTGGGTGACAATATCGGATTTGTTGTTGGCAAACTCAATGAGACTTCCTCAATCTCTGGAGCAAATGCCCGCCTTACTTTAATGGCCTCAACCCGCCAGGACATAGAAATCTTGCTCCGAAGGCCAGTGATTCGTGTAAGGCATTCCAGCTTTTGGAGCTGTGGTGACTGGTTTCTTCTGGCTTGTCATTCTCGCCAGAATAAAAGGATCAGCCGGAATCTTATTTACCTATTGTTGACAGCATACGTATTCTTTTACAGATTTTCAAATAATAAAGTTTGTTCAGCTGAGAATACATCGACGGCTTACAGTTCTAACCTCCACATTTTCAATAGGAGTTTTTCTTTTGCTAAGATGGATTGTTGTAATTGCTTTGGGTTCATCCGGAAATCTAAACAGCCGAGTGCTATGTTCGGTATCAATAATAATCTCTCTCAGGAGCTGTTATTGGATGAAGACATTGAAGATGACGATGGCTCATATGATGGTGAGGTTACTAACATCAGCAGTGGCGATGATAGTGAAGTGCAAATTCGTCCCAACCGGTCTGAGGATATTTTGAAATTGAGAGCAGAGAATGACATGATTTGTAGGCAATTTCCTGTTAAGGAAACTCACAAAGTTATTCGCACAGAGGATGAAAATGGAAACAAGAAGATAAATGAGTATATTCGTGAATATAAGATAGGTTCTGGTAGCTATGGGAAAGTGGTTTTGTATCAAAGTTCAGTTGATGGTGAGCACTATGCAATCAAGGTAAGGACTATTTATAGTGTGGTCTTTCACAAGTCTCATTTACTGAAGGTTCGAGTTGCACTCTCAGAGACTGCCATGACAGATGTTCTGCGTGAGGTACTCATCATGAAAATGTTGGAACATCCTAATATTGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCAGATCACTTTTACATGGTACTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTACAGGACCTCTTTGTGGCTTAGGTGAAGAGACTGCTAGGAGATACTTGCGTGACATTGTTTCAGGATTAATGTATCTACATGCTCATAATATTGTGCATGGGGATATTAAACCTGCTAATCTGTTGGTTACTTGCCATGGTAAGGTGAAGATAGGGGATTTCAGTGTCAGCCAGGTATTTGAGGATGATAATGATGAACTTCGTCGGTCCCCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTGGGGGTTCCCTATCATGGTAAAGCTGCAGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATTCTGGGTGAATATCCATTCCTTGGTGATACTCTTCCGGATACTTACGATAAAATAGTCAATAACCCTTTAGTCCTTCCAGATAATTTGAACCTGCAATTGAAAAACTTGCTAGAAGGGCTACTTTGCAAAGATCCAAAACTAAGGTTGACATTAGGGGATGTTGCAAAGCATAGCTGGGTTATAGGAGACTATGGGCCAATTCCTGAGTACTTGTGCTTCTGTAAACTCAAGAGGTTGAAGAGGGAAGACTTAGATAGGAGCAATATACTTGCTTGA	1824	0.4337	MERTATMSSAVLESTILTGDDTDVASMFLPMREEDESLFVDLREQPECSMSFAGMAYMFGAISSAIKATMGYNQKQLAHLATAKDLGDNIGFVVGKLNETSSISGANARLTLMASTRQDIEILLRRPVIRVRHSSFWSCGDWFLLACHSRQNKRISRNLIYLLLTAYVFFYRFSNNKVCSAENTSTAYSSNLHIFNRSFSFAKMDCCNCFGFIRKSKQPSAMFGINNNLSQELLLDEDIEDDDGSYDGEVTNISSGDDSEVQIRPNRSEDILKLRAENDMICRQFPVKETHKVIRTEDENGNKKINEYIREYKIGSGSYGKVVLYQSSVDGEHYAIKVRTIYSVVFHKSHLLKVRVALSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGTGPLCGLGEETARRYLRDIVSGLMYLHAHNIVHGDIKPANLLVTCHGKVKIGDFSVSQVFEDDNDELRRSPGTPVFTAPECCLGVPYHGKAADTWAVGVTLYCMILGEYPFLGDTLPDTYDKIVNNPLVLPDNLNLQLKNLLEGLLCKDPKLRLTLGDVAKHSWVIGDYGPIPEYLCFCKLKRLKREDLDRSNILA	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele10g1160	607	Pfam	Nodulin-like	50	101	IPR010658	-
	Lele10g1160	607	FunFam	Serine/threonine-protein kinase Ssp1	302	411	-	-
	Lele10g1160	607	Pfam	Protein kinase domain	310	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele10g1160	607	ProSiteProfiles	Protein kinase domain profile.	308	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele10g1160	607	CDD	STKc_LKB1_CaMKK	314	576	-	-
	Lele10g1160	607	ProSitePatterns	Protein kinases ATP-binding region signature.	314	337	IPR017441	GO:0005524
	Lele10g1160	607	SUPERFAMILY	Protein kinase-like (PK-like)	305	587	IPR011009	-
	Lele10g1160	607	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	442	454	IPR008271	GO:0004672\|GO:0006468
	Lele10g1160	607	FunFam	Serine/threonine-protein kinase GRIK2	298	605	-	-
	Lele10g1160	607	SMART	serkin_6	308	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele10g1160	607	Gene3D	Transferase(Phosphotransferase) domain 1	298	598	-	-
	Lele10g1160	607	PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	265	580	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele10g1160	Lele-ChrLele10	22846195	22853498	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele10g1160	303	583	CBL-interacting serine-threonine protein kinases	AT5G35410	32.384	5.77e-43	156

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-LKB	Lele10g1160		Pkinase	2e-52	CL0016