Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1157 ATGAACAAATTGCTGGATAAAGGTACAGTTGAATCATGCTTAATCATGCTTCATAGTTTATTATTGAAGATTCCGTGGAATATAAGCACCATTTGGATTTGGCGCTGGCATTTTGCTTTATCTGTTCCACAAGGGCGTTGGGTTGATGCTATGAATGAATCGTATTTGCTCCATCAAGAAAGACCTGAAATTGATTTGAGCTTTTTTTCTTATCGCTTTTCTCTGTTCGTTCGTTCAGCTGGCAGGTTGTCACTTGCTCCTTTTGCGAATGCAATAAATGGACAAAGTCAAATTGAAGTTAGCCGGGGTCTTGAAGGTGCCTTACTGTGACATCATGCTGCTTCGTGCTTAAGAACGGTTTCTCTTCCAGTGCCTAAGGTTGATCCAATGGGAATGTATGAGGAATCAACTCGTGTCTGTCACTGGAAGCGGAAAAATCTTCTTCTAGAAATACCCCCAAGAACATCAGAAGAGCATTCTCAAGATTTTGTTGGAATTAAGATGCCAATGACTCGAAGTCCCACTCCCACTCCCAAGAGAGTGAATTTTCTTGAGACTTCACGCTCTGTTGATGCGCCGGTTCATAATTCTCCTGGGCCTTCCACATCAAGAGGCAAATCATCCATTAAAAGTATCTTACCAAAGTTGAACTTCAAGCATAAGACGTCGTCAGATATTGAAAAGGCTTTTACTGCAGCTCCAGAAAGTTCTTCTTCAGTCCATCGAGAAAAACTTTCAATTGCAAGTTCATTGTCCCTCACTAAGATATTTACACCTAGAATTAAGAGAACGTCATCATTACCAGTAGATGAACTTCATTCAAACTTGGAATCTGCTCATGCTGAAAGTGTCGGCGGATCTCTTTATAGTACAAAGGAGCAGGGGCATATAGCCCGCTCTAAGTCGGTGCCTGTCACTGGTTTAGATAAGGGCATACGGAGAATGGATTCGTTTTACCGTGTTATTCCTTCCACTCCTCATGTAAAGGGAAAAAAAGAATTGTTAACCACATCCCCTTCAAAGGATACCGAAAACAACGACGAAGACGATGATGAAGGTGAAGATATAGCTGAAGAAGATGCAGTTTGTAGGATTTGTTTGGTTGATCTATGTGAAGGAGGTGAAACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAGGAATGCGCCATTAAATGGTTTAGTATCAAAGGTAACAAGATCTGTGACGTGTGCAAGGAGGAGGTCCGGAACCTACCCGTCACACTATTAAGGATCCAAAATGTTGTAAATCAGAATATGGCTAATAGGGTTTGGCAGGAAGTTCCTGTGCTTGTAATTGTGAGCATGCTAGCTTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAGAATGGGTACTGGTGCAATTGCCATATCTCTTCCATTCTCATGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACCATGGTGAATAGCAGGTTCATCTGGTTTTATGCTTCCTCCCAATTCGCTCTCGTGGTTCTTTTCGCGCATATATTTTACTCACTGGTTCATGTGCAGGCAGTTTTGGCGATCCTTCTTGCAACATTTGCAGGGTTTGGTATGGTGATGAGTGGGAGCTCTGTACTTGTCGAAATTGTTCGATGGAGGAGAAGATGGCTGGCAGTATCAGAGCAGCGCCATGGTCCTCATGGTTCAGTGCAAGCACATTCAGGTGCTCCCGGCAGTGGTCAAACGGCGGCGCTAAATCAACAAAACTCGGTTTAG 1767 0.4324 MNKLLDKGTVESCLIMLHSLLLKIPWNISTIWIWRWHFALSVPQGRWVDAMNESYLLHQERPEIDLSFFSYRFSLFVRSAGRLSLAPFANAINGQSQIEVSRGLEGALLXHHAASCLRTVSLPVPKVDPMGMYEESTRVCHWKRKNLLLEIPPRTSEEHSQDFVGIKMPMTRSPTPTPKRVNFLETSRSVDAPVHNSPGPSTSRGKSSIKSILPKLNFKHKTSSDIEKAFTAAPESSSSVHREKLSIASSLSLTKIFTPRIKRTSSLPVDELHSNLESAHAESVGGSLYSTKEQGHIARSKSVPVTGLDKGIRRMDSFYRVIPSTPHVKGKKELLTTSPSKDTENNDEDDDEGEDIAEEDAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKICDVCKEEVRNLPVTLLRIQNVVNQNMANRVWQEVPVLVIVSMLAYFCFLEQLLVGRMGTGAIAISLPFSCVLGLLSSMTSSTMVNSRFIWFYASSQFALVVLFAHIFYSLVHVQAVLAILLATFAGFGMVMSGSSVLVEIVRWRRRWLAVSEQRHGPHGSVQAHSGAPGSGQTAALNQQNSV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1157 588 SMART ringv_2 362 411 IPR011016 GO:0008270
Lele10g1157 588 MobiDBLite consensus disorder prediction 330 354 - -
Lele10g1157 588 Pfam RING-variant domain 363 410 IPR011016 GO:0008270
Lele10g1157 588 MobiDBLite consensus disorder prediction 190 210 - -
Lele10g1157 588 MobiDBLite consensus disorder prediction 190 211 - -
Lele10g1157 588 CDD RING_CH-C4HC3_MARCH 363 411 - -
Lele10g1157 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 418 IPR013083 -
Lele10g1157 588 ProSiteProfiles Zinc finger RING-CH-type profile. 355 417 IPR011016 GO:0008270
Lele10g1157 588 PANTHER OS02G0165000 PROTEIN 139 563 - -
Lele10g1157 588 SUPERFAMILY RING/U-box 359 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1157 Lele-ChrLele10 22822265 22827220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1157 349 417 C3H Transcription Factor Family AT2G37950 45.714 5.46e-13 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1157 10 22822265 22827220 Lele11g1183 11 19018088 19021732 hybridization
Lele10g1157 10 22822265 22827220 Lele12g0141 12 1088810 1096356 hybridization