Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1152 ATGCCGCCGAAGTTCGACCCCTCACAAGTTGTCGACGTCTTTGTCCGAGTCACTGGCGGTGAGGTCGGTGCCGCGAGTTCACTCGCTCCCAAGATCGGTCCACTCGGGTTGTCCCCCAAAAAGATCGGAGAAGATATTGCCAAAGAGACTGCCAAGGACTGGAAGGGATTGCGGGTCACGGTTAAGCTTACTGTCCAGAACCGTCAGGCGAAGAGTATTGCCTTGCTCATTGTGAACAATTTTGTTATTGATGTTCTTGTAGTACTATCTACGCTTCTTGTGCATTGGAAAATATTGGAGCATTGGATTAACCTTGTGATTTTACTAGTTTTCTATGAGAAATGGACACCTCGCGAACAAATACGCACAACCAGCAGTGTAGTTCAAACAACAATGGGGAAAGACGTTGAAGTTGCAGAGCAAAGAGATATGACGACCAAAGACTACCAGGACCCGCCGCCGGCGCTGTTGATCGACCCGGAGGAGCTAACCAAGTGGTCATTATACAGAGCCGTCATAGCGGAGTTCATAGCAACCCTTCTCTTCCTATACATCACTGTGCTGACCATTATCGGGTACAGCCAACAGACTTCCGGCACCACCGCTGACGCCCAGTGCAGAGGAGTTGGCCTACTTGGTATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGGCACATAAACCCGGCGGTGACATTCGGGCTGTTCGTCGGAAGAAAGGTGTCGCTGATAAGGGCGGTGCTGTATATCTTAGCACAAATGGCCGGAGCTATCTGCGGGACTGGACTGGCCAAGGCCTTCCAGAAATCTTACTACAACAGGTATGGAGGCGGAGCCAACTTCGTACACGATGGTTACAACACTGGGACGGCTTTGGGTGCTGAGATCATCGGCACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCTAAGAGGAACGCCAGAGACTCCCACGTTCCTGTCTTGGCACCACTGCCCATTGGATTCGCCGTGTTCATGGTTCACTTGGCTACCATCCCAGTTACCGGTACCGGAATCAACCCAGCAAGAAGCTTCGGCGCTGCTGTTATCTACAACGATGGCAAGATCTGGGATGATCATTGGATATTCTGGGTTGGACCAATAATTGGAGCTGCCGCGGCTGCGATCTACCACCAACACATCCTGAGAGCTACGGCCATAAAAGCTCTTGGCTCTTTCAGGAGCAACGCTTAA 1251 0.5164 MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKSIALLIVNNFVIDVLVVLSTLLVHWKILEHWINLVILLVFYEKWTPREQIRTTSSVVQTTMGKDVEVAEQRDMTTKDYQDPPPALLIDPEELTKWSLYRAVIAEFIATLLFLYITVLTIIGYSQQTSGTTADAQCRGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRAVLYILAQMAGAICGTGLAKAFQKSYYNRYGGGANFVHDGYNTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNDGKIWDDHWIFWVGPIIGAAAAAIYHQHILRATAIKALGSFRSNA 416
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1152 416 SMART rl11c 13 137 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele10g1152 416 Pfam Ribosomal protein L11, N-terminal domain 15 69 IPR020784 -
Lele10g1152 416 PRINTS Major intrinsic protein family signature 255 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele10g1152 416 PRINTS Major intrinsic protein family signature 304 322 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele10g1152 416 PRINTS Major intrinsic protein family signature 170 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele10g1152 416 PRINTS Major intrinsic protein family signature 218 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele10g1152 416 PRINTS Major intrinsic protein family signature 340 362 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele10g1152 416 PRINTS Major intrinsic protein family signature 380 400 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele10g1152 416 Gene3D - 1 76 IPR036796 -
Lele10g1152 416 TIGRFAM MIP: MIP family channel proteins 174 396 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele10g1152 416 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 73 IPR036796 -
Lele10g1152 416 ProSitePatterns MIP family signature. 236 244 IPR022357 -
Lele10g1152 416 Gene3D Glycerol uptake facilitator protein. 155 416 IPR023271 -
Lele10g1152 416 CDD MIP 170 400 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele10g1152 416 FunFam 60S ribosomal protein L12 1 77 - -
Lele10g1152 416 SUPERFAMILY Aquaporin-like 161 402 IPR023271 -
Lele10g1152 416 FunFam Probable aquaporin PIP1-2 155 416 - -
Lele10g1152 416 Pfam Major intrinsic protein 162 397 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele10g1152 416 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 140 405 IPR034294 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele10g1152 Lele-ChrLele10 22792371 22798473 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1152 132 416 Major Intrinsic Protein MIP AT2G37170 78.596 1.87e-163 461