Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1144 ATGAATGGAGTACAGTGGTGGGGGATGTTCAGTCATCGGTGTGGGAGAGAGGAGAAGAGAGATTCTTTGAGATCTGGAACCAAAATGGAACACCATCAGGTTTCTGAAATAAGGGAGAAGAGGTTGGTTTCTTCTGTTGGAGGGAAGTTTTTGATTGAAGCGTGGAATCGACCGAGTTTCTCCTTCTTTGCGGCGCTCAAAAAGGAAGTTGAGAAGAGCTTGGATCCGCAACTCTGGCACGCGTGCGCCGGAGGTATGGTTCAAATGCCTCCGGTGAACTCCAAAGTCTTTTACTTTCCTCAAGGCCACGCCGAGCACGCTCAGGCCAACCTTAATTTTCCTCCTTCCTTAAGGATTCCACCGCTTATTCTTTGTCGCGTGGTATCGGTGAAATTCTTGGCCGACCCAGAAACTGATGAGGTTTTTGCTAAGATAAGGTTGGTTCCTGTGAGAAATTCCGAGCTCGATTACGACGACGACGACGGGGTTACGGACGGTAATGGATCGGACAATTCAGAAAAACCAGCATCTTTTGCCAAGACATTAACCCAATCTGATGCGAACAATGGTGGGGGCTTCTCTGTTCCAAGGTACTGCGCAGAAACTATCTTCCCACGGCTGGATTACACCGCCGAACCACCCGTTCAAACCGTGGCTGCCAAGGACGTTCATGGCGAAAGTTGGAAATTCAGACATATATACAGGGGAACACCTCGTCGGCACTTACTAACCACTGGGTGGAGCACTTTCGTGAACCAAAAGAAACTCGTTGCTGGGGATTCTATTGTTTTTCTGAGGGCCGAAAACGGCGAACTCTGTGTTGGAATTCGCCGAGCAAAACGTGGCGGTTTCGGCAGCCGGATGCAAACCCCATCATCCGGCTGGCGCGGTGGTGCCGCCGGAAGTGGTCTGGGGCCTTGTGGGGGCTTCTCTTATTTCTTGAGAGAGGAGAACAAATTACTGCCTAATGCTTGTGGGAATTCAAGCCCTGGAAGAGCAAAAGTGAGGCCTGAATCTGTGATGGAAGCTATGAAACTGGCTGCAAGTGGTCAAGCATTTGAAGTAGTTTATTATCCTCGAGCTAGTGCTCCAGAGTTTTGTATTAAGGCTTCTTCTGTGAGGGCTGCAATGAGAATTCAATGGTGCTGTGGCATGAGGTTCAAGATGCCCTTTGAGACCGAGGATTCTTCTAGAATCAGCTGGTTCATGGGGACCATTGCTTCTGTTCAGGTGGTCGATCCCGTGCGTTGGCCCCACTCGTCTTGGCGACTTCTTCAGGTTACTTGGGATGAACCAGATCTGCTGCAGAATGTGAAGCGTGTTAGCCCATGGTTGGTAGAATTGGTATCGAACATGCCGGTCATTCATTTCACGCCTTTTTCTACGCCAAGGAAGAAGCTGCGGCTTCCACATCACTCGGACTTCCCCCTTGATGGTGAATTTCCGATACCGACGTTTTCAGGCAACCTCCTCGGGCCGAGCAGCCCCTCGTGTTGTCTATCTGATAATGCTCCTACAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCTCTTTCAGATCTCCACCTTAACAATAAACTACAGTTGGGGTTGCTTCCAACTAACATCCAGCAGCTTGATATACATCCCGGGATGTCCAATGGCAAGATGGCAAACAACGGCGAGAACAAAGAAAGCTTGTCTTGCTTGCTGACCATGGGAAATTCTTGTAAGAGTTTGGAGAAATCTGATAATGTGAAGAGACACCGGTTCTTGCTTTTTGGTCAACCAATACTCACCGAGCAACAAATTTCTCGAAGCTGTTCTAGCGATAAGTTGTCTCAGAATGTTACCGAAAAAGATTTGCCAGATGAAAATAGGGACAAGACAAAGTTCAAATTGGGTGATTCACAATCTGGCCTTTCTCAGCAGTTCTCACCTGGGAAATCTTCTAATAATGTTGAGTATTCTTGGCAATTAGGCTTGGATAACGGTCATTGCAAGGTTTTCATGGAATCCGAGGATGTGGGACGAACCCTTGACCTATCATGTCTCGGGTCTTATGAAGAGCTCTACAGAAGACTGGCCAACATGTTTGGAATCGAAAGATCTACAATGTTACGCCATGTACTCTACTATGATGCATCTGGTGCTGTTAAGCAAACCGGTCTAGAACCCTTCAGTGACTTCATGAAAACAGCAAAAAGATTAACAATTCTGACCGAGTCAGGCAGCAAAGAGTTTTAA 2232 0.4772 MNGVQWWGMFSHRCGREEKRDSLRSGTKMEHHQVSEIREKRLVSSVGGKFLIEAWNRPSFSFFAALKKEVEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQANLNFPPSLRIPPLILCRVVSVKFLADPETDEVFAKIRLVPVRNSELDYDDDDGVTDGNGSDNSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPVQTVAAKDVHGESWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGELCVGIRRAKRGGFGSRMQTPSSGWRGGAAGSGLGPCGGFSYFLREENKLLPNACGNSSPGRAKVRPESVMEAMKLAASGQAFEVVYYPRASAPEFCIKASSVRAAMRIQWCCGMRFKMPFETEDSSRISWFMGTIASVQVVDPVRWPHSSWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHFTPFSTPRKKLRLPHHSDFPLDGEFPIPTFSGNLLGPSSPSCCLSDNAPTGIQGARHAQFGISLSDLHLNNKLQLGLLPTNIQQLDIHPGMSNGKMANNGENKESLSCLLTMGNSCKSLEKSDNVKRHRFLLFGQPILTEQQISRSCSSDKLSQNVTEKDLPDENRDKTKFKLGDSQSGLSQQFSPGKSSNNVEYSWQLGLDNGHCKVFMESEDVGRTLDLSCLGSYEELYRRLANMFGIERSTMLRHVLYYDASGAVKQTGLEPFSDFMKTAKRLTILTESGSKEF 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1144 743 SUPERFAMILY DNA-binding pseudobarrel domain 172 279 IPR015300 -
Lele10g1144 743 CDD B3_DNA 177 278 IPR003340 GO:0003677
Lele10g1144 743 ProSiteProfiles B3 DNA-binding domain profile. 178 280 IPR003340 GO:0003677
Lele10g1144 743 MobiDBLite consensus disorder prediction 612 629 - -
Lele10g1144 743 MobiDBLite consensus disorder prediction 630 646 - -
Lele10g1144 743 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 72 738 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele10g1144 743 Pfam Auxin response factor 343 426 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele10g1144 743 FunFam Auxin response factor 176 280 - -
Lele10g1144 743 Gene3D - 380 453 - -
Lele10g1144 743 Gene3D - 176 280 IPR015300 -
Lele10g1144 743 FunFam Auxin response factor 381 454 - -
Lele10g1144 743 Pfam B3 DNA binding domain 178 279 IPR003340 GO:0003677
Lele10g1144 743 ProSiteProfiles PB1 domain profile. 659 739 IPR000270 GO:0005515
Lele10g1144 743 Gene3D - 658 743 - -
Lele10g1144 743 MobiDBLite consensus disorder prediction 605 646 - -
Lele10g1144 743 SMART B3_2 178 280 IPR003340 GO:0003677
Lele10g1144 743 MobiDBLite consensus disorder prediction 156 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1144 Lele-ChrLele10 22749840 22753364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1144 66 741 B3 DNA Binding Superfamily AT4G30080 58.032 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele10g1144 B3 3.9e-22 CL0405