LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele10g1138	ATGAAGCTCCAATTCAAAGTTGCTCTTGCTTTTGTAATTAGCTTGCTCTGGATTCAGCCCTCATTTTGTGATGGACCTTCTGGGAGCCTAAACAAATGGATATGTACATGTTCTTTTCAAGGGAACCAGAGTTCCTATCTTGCTAACTGTTCTACATCATGCGATTGCCGTTTAGATGACAAAGAGAGTGCATCCTTATGGACATGCTTGTGTGATCCCAATGGGTTTCTTAATGTGGAAGCAGATGGCCATAGTTCAAATTGCTTTACTGCCTGCAACTGCACCTGGGGAGCTCTCACCATCTCACAAGGTTCAAAGAAACACATTTCCAGCAAGATTGTTATAATTATACTAATACTATGTGTTATATGCACAACTGGTGCATTTCTTGCCTCAATCATATGCTATGTATGGCGAAGGGACAAATGTACCATTCAATCACCCATATTCTCATCAGACAACGAAACAAGTTACAATAGCACTGCCATCTTAATTAGTCATAGAACTTCAGTGCCAGAAACAATACCTGTTACAAATTCTCCCATTAATTTGATCTCAGGATGTTTTCAGATGGCCTCTTTCTTGTGTGAGATCAAAGGAGAAACTTTTCACGGAAATATTATTCGATTTTCATTTGCAGTACTAGAAAATGCCACTGAAATTTTTTCAGCTTCCAACCTGATTGGACTAGGCAGAAGTAGTTACGTATATCGTGGTCGACTGAAGAATGGTACTAATGTGGCAGTGAAGCGTCTAAAAGCTCAAGGGGGGACTGAAGCAGACTCTGAGTTTTTGACAGAGATTGAACTACTATCTAGACTTCATCATTGTCACCTGGTGCCTTTGCTTGGATACTGCATAGAATCAAAAGGAAAACATGTTGAGAGGTTACTTGTATTTAAGTACATGGCTAATGGTAATTTGAGGGACTGTTTGGATGGAGTTTCTGGAAAAAGTCTGGATTGGGCTACGCGTGTTACAGTTGCTATAGGAGCTGCAAGGGGATTGGAATACCTACATGAAGCGGCTGCTCCAAGAATTCTGCATAGAGATGTTAAATCAACAAACATTCTTCTGGATGAAAATTATCAAGCAAAAATTACCGATCTTGGTATGGCGAAAAACTTAGGAGCTGATGACTTCCCCAGCAGTTCAAATTCTCCAGCTAGAATGCAGGGCACATTTGGTTATTTTGCACCTGAGTATGCAATTGTTGGAAGGGCCTCTCTTAAGTCAGACATCTTCAGTTTTGGGGTGGTTCTTCTTGAGATTATCAGTGGTCGTCAACCTATCTATAAATCTAAAGGCAAAGAAGAAAGCCTCGTCATATGGGCTGCTCCTCTCTTACAAGATGAAAGACGCATAATAACCGAGTTAGCTGACCCACAATTAAAAGGAAACTTCCCGGGAAAAGAGATGCAGATAATGGCATATTTAGCAAAGGAGTGTTTGCTGTTGGATCCTGATACTCGACCAACCATGTGTGAAGTCGTTCAAATTCTTTCAACTATATCGCCAGACAGATCTAAATGGACAAGAAACATTCCAGTGAACCTTTTCCAGGAACCAAAGAATTCAGAGAAGCTAAAGCAAGTTCCATCTAGTAGAGTAGATATTGACCACAATCCTTGGGTTGGAAACTTCAATAATGAAGTAGATGTAGTTTCTGCTGAGCATATGGATAGTTTGGTCCTGGTGACTTCAAAAGCTGAGAGCCGGTATGGATCAGAGGAAGAAATTGTGGACCTAACTGAGCCTCGGATCGAATCATTTTGCGTGACAAACGGATCAAACCACCAAGAATATTCAATTATGCTTTATAAAGCTCTGGAGGGTGCAATAATTTTGGAAACTTTCCCCAAGACGACTGGGGATGTTTTTGCATTGGCGCTGGAATCTGGTGGCATTAAGTTCAGTAATGTTGTTTTCAGTTTGAACCATCAGTATATTGTAGTTGTATATAATTTTGCAACAGAGAGTTTATTGTGTGAGGTCTTAATTGATTTTGCATCTCATATCATCTCATTTGCCCTTCCATTGGATGTTGTAAAGGAAAGAGGTGCCAAACTCAAAATAAGTTTATACCCCGTTTCTAGCAGTGATAATCTTAACGTGCTTGTGCCAGGTGATCTCCCAGTTGTCATTTCATATGCTAGCCTTGCTCTGGCGGATGCTGGAATAATGATGTATGATCTTGTTTCCTCAGTTTCTGTGGGAATGCAACTGTGCCTGGATGCATGTGCTGAACTTGCGAAGATTATGAGGTCATGTTTGCGAGATGCTGCTTCAGCTTCACAGGAATAG	2304	0.4071	MKLQFKVALAFVISLLWIQPSFCDGPSGSLNKWICTCSFQGNQSSYLANCSTSCDCRLDDKESASLWTCLCDPNGFLNVEADGHSSNCFTACNCTWGALTISQGSKKHISSKIVIIILILCVICTTGAFLASIICYVWRRDKCTIQSPIFSSDNETSYNSTAILISHRTSVPETIPVTNSPINLISGCFQMASFLCEIKGETFHGNIIRFSFAVLENATEIFSASNLIGLGRSSYVYRGRLKNGTNVAVKRLKAQGGTEADSEFLTEIELLSRLHHCHLVPLLGYCIESKGKHVERLLVFKYMANGNLRDCLDGVSGKSLDWATRVTVAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENYQAKITDLGMAKNLGADDFPSSSNSPARMQGTFGYFAPEYAIVGRASLKSDIFSFGVVLLEIISGRQPIYKSKGKEESLVIWAAPLLQDERRIITELADPQLKGNFPGKEMQIMAYLAKECLLLDPDTRPTMCEVVQILSTISPDRSKWTRNIPVNLFQEPKNSEKLKQVPSSRVDIDHNPWVGNFNNEVDVVSAEHMDSLVLVTSKAESRYGSEEEIVDLTEPRIESFCVTNGSNHQEYSIMLYKALEGAIILETFPKTTGDVFALALESGGIKFSNVVFSLNHQYIVVVYNFATESLLCEVLIDFASHIISFALPLDVVKERGAKLKISLYPVSSSDNLNVLVPGDLPVVISYASLALADAGIMMYDLVSSVSVGMQLCLDACAELAKIMRSCLRDAASASQE	767

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele10g1138	767	ProSiteProfiles	Protein kinase domain profile.	222	504	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele10g1138	767	CDD	STKc_IRAK	228	501	-	-
	Lele10g1138	767	FunFam	receptor-like serine/threonine-protein kinase NCRK	303	513	-	-
	Lele10g1138	767	SUPERFAMILY	Protein kinase-like (PK-like)	203	501	IPR011009	-
	Lele10g1138	767	Gene3D	Phosphorylase Kinase; domain 1	196	302	-	-
	Lele10g1138	767	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	347	359	IPR008271	GO:0004672\|GO:0006468
	Lele10g1138	767	SMART	serkin_6	222	504	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele10g1138	767	PANTHER	OS01G0750732 PROTEIN	72	517	-	-
	Lele10g1138	767	Pfam	Protein tyrosine and serine/threonine kinase	225	501	IPR001245	GO:0004672\|GO:0006468
	Lele10g1138	767	FunFam	receptor-like serine/threonine-protein kinase NCRK	196	302	-	-
	Lele10g1138	767	Gene3D	-	563	751	IPR027408	-
	Lele10g1138	767	Gene3D	Transferase(Phosphotransferase) domain 1	303	518	-	-
	Lele10g1138	767	ProSitePatterns	Protein kinases ATP-binding region signature.	228	250	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele10g1138	Lele-ChrLele10	22696743	22703844	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele10g1138	1	595	Receptor kinase-like Gene Family	AT2G28250	54.153	0.0	589

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XVI	Lele10g1138		PK_Tyr_Ser-Thr	1.8e-42	CL0016