Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1117 ATGGAAGAAATACAATCTCAATCGGATCATTATAGATCTTCATCCTCATCAGTGAGTAGCCCAGCAAGTAGGGTTCCATCAAGTAACTTCTTCTACCTGCGTAAACCCGGTTCACTCAGACAACCAATCTCGTTTGAGGATTCACCTGAGTGGGACGATACTGATACTGATGTTAGGATCGAAGGAGGTGATTCTATTCATGTTGCTAGTACACCAGTTTCGCCATCTCTTTCAAAGCTCAACAGTGAGTCCTTGCCATCCCAACATCTACCTGAAGGTCCAGCAGTTCCACGAAAAGTTGCAGGAGCTTCCATTGTGTGGAAGGACTTGACTGTTACAATACAGGGAAAACGGAAATACTCTGATAAGGTTGTTAAGAGTTCAACTGGCTATGCCTTACCTGGGACAATGACGGTAATCATGGGTCCAGCTAAATCAGGGAAATCTACACTATTACGGGCTATTGCAGGAAGATTGCATCCATCGGCTAGGATTTATGGGGAAGTATTTGTGAATGGCTTAAAATCAGACATGCTTTATGGATCATACGGTTATGTAGAGAGAGAAACCACTCTAATTGGGGCCCTCACCGTGCGAGAATTTCTATACTATTCGGCCCTGCTTCAACTTCCTGGTTTCTTTTGTCAGAAAAAGAATGTGGTTGAGGACGCCATTCATGCAATGTCTTTGGGGGATTATGCTAATAAACTTATCGGTGGACATTGCTACATGAAGGGCCTTGCCAGTGGGGAGAGAAGGCGTGTTAGCATTGCCAGGGAGCTGGTGATGAAGCCACATATCTTATTTATAGATGAGCCCCTTTATCATCTAGACAGTGTCTCAGCGCTTTTGATGATGGTTACATTGAAGAAACTTACAAGCACTGGTTATACTCTTATTTTCACCATCTATCAGAGTAGCACAGAAGTCTTTGGCCTTTTTGATCGAATCTGTCTGCTTTCAAATGGAAACACACTGTTCTTTGGAGAAACATTAGCTTGTTTGCAGCACTTCTCAAATGCTGGATTTCCTTGCCCTATCATGCAAAGTCCTACTGATCACTTTCTCCGTGCAATTAATACAGATTTTGACAGGATAATTGCAATGTGCAAAAACTGGCAGGATGACAATGGGGAGTTTTCTTCTGTAAACATGGACACTGCTGTTGCTATACGTACACTTGAAGCAACGTATAAATCATCTGCAGATGCAGCTGCTGTTGAAACTATGACTTTGAAACTTATTGAGAAGGAAGGCCCAGCTCTTAAAAGCAAAGGCAAAGCTAGTATTGCTACTCGAATTGCAGTCTTGACATGGAGATCATTATTAGTTATGTCAAGGGAGTGGAAATATTATTGGCTTCGACTTATTCTTTATATGCTTCTCACACTCTGTGTTGGGACTGTGTTTTCTGGTTTGGGCCATTCTCTGTCCTCAGTTGTGACTAGAGTTGCAGCAATTTTTGTATTTGTATCATTCTGCTCCCTTCTATGCATTGCTGGCGTGCCTTCACTTTTGAAAGAAATCAAGATATATGCATGTGAAGAATCAAACGAGCACTCTGGGGCATTAGCATTTTTACTTGGGCAACTCCTCTCAAGCATCCCTTTCCTGTTTCTCATCTCCATTTCATCGAGCCTCGTATTCTATTTCCTAGTTGGGCTGCGAGATGAGTTTAGCTTGTTGATGTACTTTGTGCTGAACTTTTTCATGTGTCTGTTAGTGAATGATGGACTTGTGCTAGTCATTGCTTCTCTATGGCAAGATGCCTTCTGGAGTGTTTTGACCTTGCTGTGCTTACATGTGGTCATGATGCTTTCTGCTGGCTATTTTAGAATTCGAAATGCTTTGCCTGGACCTGTGTGGATGTATCCAATATCCTATATATCCTTTCACACGTACGCTATTCAGGCAAGTAGCTCAGGTCTATTGGAGAACGAGTACCTAGGGACGTTTTTTGCAGTTGGGCAGGTAAGGAGCATATCTGGGTTTCAAGCTCTCCAAAGTGCGTATAACATTTCCGGCGACAATAATTCAAAGTGGGAGAATTTACTGGTTTTGTTTCTCATGGCACTTGGTTATCGTATTATCGTGTTTGTTTTATTACGTTTTTGCGTGGGGAGAAAAACATCCCTCCTTAAAAGTTTTCCATGTTGTAATCGGGATACAACAAATACAAGATGA 2184 0.4208 MEEIQSQSDHYRSSSSSVSSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWDDTDTDVRIEGGDSIHVASTPVSPSLSKLNSESLPSQHLPEGPAVPRKVAGASIVWKDLTVTIQGKRKYSDKVVKSSTGYALPGTMTVIMGPAKSGKSTLLRAIAGRLHPSARIYGEVFVNGLKSDMLYGSYGYVERETTLIGALTVREFLYYSALLQLPGFFCQKKNVVEDAIHAMSLGDYANKLIGGHCYMKGLASGERRRVSIARELVMKPHILFIDEPLYHLDSVSALLMMVTLKKLTSTGYTLIFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPTDHFLRAINTDFDRIIAMCKNWQDDNGEFSSVNMDTAVAIRTLEATYKSSADAAAVETMTLKLIEKEGPALKSKGKASIATRIAVLTWRSLLVMSREWKYYWLRLILYMLLTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFCSLLCIAGVPSLLKEIKIYACEESNEHSGALAFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNDGLVLVIASLWQDAFWSVLTLLCLHVVMMLSAGYFRIRNALPGPVWMYPISYISFHTYAIQASSSGLLENEYLGTFFAVGQVRSISGFQALQSAYNISGDNNSKWENLLVLFLMALGYRIIVFVLLRFCVGRKTSLLKSFPCCNRDTTNTR 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1117 727 ProSitePatterns ABC transporters family signature. 247 261 IPR017871 GO:0005524|GO:0016887
Lele10g1117 727 Pfam ABC transporter 134 274 IPR003439 GO:0005524
Lele10g1117 727 MobiDBLite consensus disorder prediction 8 26 - -
Lele10g1117 727 Gene3D - 98 342 IPR027417 -
Lele10g1117 727 FunFam ABC transporter G family member 3 98 342 - -
Lele10g1117 727 MobiDBLite consensus disorder prediction 69 88 - -
Lele10g1117 727 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 98 705 - -
Lele10g1117 727 Pfam ABC-2 type transporter 434 643 IPR013525 GO:0016020|GO:0140359
Lele10g1117 727 MobiDBLite consensus disorder prediction 66 94 - -
Lele10g1117 727 CDD ABCG_EPDR 102 329 - -
Lele10g1117 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 341 IPR027417 -
Lele10g1117 727 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 105 347 IPR003439 GO:0005524
Lele10g1117 727 MobiDBLite consensus disorder prediction 1 26 - -
Lele10g1117 727 SMART AAA_5 134 324 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1117 Lele-ChrLele10 22546402 22557716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1117 135 301 Calmodulin-binding Proteins AT2G36910 28.249 3.77e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1117 10 22546402 22557716 Lele11g1150 11 18764876 18770161 hybridization
Lele10g1117 10 22546402 22557716 Lele12g0174 12 1348175 1354360 hybridization