Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1115 ATGATAAGGGCATTTAAGGTGGGGTATGAGGACGTCCTAAGTTCTACTCTAAGAGATGGTTTTGTGGGGAAGGTGGTAGCTTCATCTGCTTTTATGTCAAAAGCTAAAGCATTGAGGAAGGCTGTAGGAATGGTTATGGTGGAACAATACAAAGAATATAATGCAATTGGGTCATTGAGACTGATTGCTGATAGTCTTCTCCATTCCACACCGAAAGACACACTGCTTCCAAACCCTAGATCTAATCTTTCTTTTGTTTATCATCGCGTCCTCGATCTCCTCTCCCTCCTCTCTTTTCCAAGGTTAAGGATGGTGTCGGACGCGAGTAAGAAGAAGGCAGCACAGAAGAAGGCCGCCGCCGCCGCTAAGAGAGGAGGGAAGGCCGCTGCTGCGGCCGCTTCATCAAAAGCGGCGGCATCGGAGGCTCAGAAGGCTGCCGATAAGCTTGCCAATGGAGTTGGTGAAATCCAGATATCCGATCGTACGTGTACAGGCGTCCTCTGTTCACATCCTCTTTCGAGGGATATTCGGATAGAATCTCTATCAGTTACTTTTCATGGACATGATCTCATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGACGCTATGGTCTACTTGGATTAAATGGTTGTGGAAAATCTACTCTCCTTACGGCATTAGGTTGTCGAGAGCTTCCAATTCCTGATCACATGGATATTTATCACCTTACTCGAGAAATTGAAGCTTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAAGAGAGGTTGAAATTGGAGAAAGAAGCTGAAATTTTGGCAGCACAGGATGATGGAGGTGGCGAAAGTCTTGAATGTGTTTATGAACGATTGGAAGCTCTGGATGCGTCTACTGCAGAAAAGCGAGCTGCTGAAATTTTACATGGCCTGGGTTTTAACAAGCAGATGCAAGCTAAGAAGACACGTGATTTTTCTGGTGGTTGGAGAATGAGGATAGCTTTAGCACGTGCTCTATTTATGAAGCCAACCATTCTTTTACTCGATGAACCAACTAATCATCTAGATCTTGAAGCATGTGTATGGCTGGAGGAAAATTTGAAAAAGTTTGACCGCATTCTGGTTGTTGTTTCTCATTCTCAAGATTTTCTCAATGGTGTTTGCACAAACATCATCCACATGCAAAACAGAACGCTAAAGCTTTACACTGGTAACTATGATCAATATGTTCAGACACGTGCTGAATTGGAAGAAAACCAGATGAAGCAGTACAGGTGGGAACAGGAGCAGATTTCTTCAATGAAGGAATATATTGCTCGATTTGGGCATGGATCTGCTAAGCTAGCTCGCCAAGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGAGGTGGACTTACTGAGAAGGTTGTCAGAGACAAAGTCTTGGTATTCCGCTTTGTTGATGTGGGAAAGCTTCCCCCACCCGTGCTTCAGTTTGTTGAGGTGACTTTTGGTTACACCCCAGATAATCTCATCTACAAAAACCTTGACTTTGGGGTGGACTTAGATTCTAGGATTGCACTTGTTGGACCCAATGGAGCTGGGAAGAGTACACTGCTTAAGCTAATGACTGGGGATCTGGTTCCTACTGACGGCATGGTCCGCCGACATAACCATCTTCGTATAGCACAATTTCATCAACATTTGGCTGAAAAGCTGGACATGGAAATGCCTGCCCTTCAGTTTATGATAAAAGAGTACCCTGGAAACGAGGAAGAGAAAATGAGGGCAGCTATTGGGAAGTTTGGACTATCAGGGAAAGCCCAGGTGATGCCTATGAAGAATTTATCTGATGGGCAGAGGAGCCGGGTAATTTTTGCTTGGTTAGCTTGGAGGCAACCTCACATGCTACTTCTGGATGAACCAACTAACCATTTGGATATTGAGACAATTGACTCCTTGGCTGAGGCATTGAATGAATGGGATGGTGGGATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCAGATCAAGCTGTGACCAGATGGGAGGGTGACATTATGGAATTCAAGGAGCATCTAAGGGAAAAGGCTGGTTTATCTGATTGA 2109 0.4448 MIRAFKVGYEDVLSSTLRDGFVGKVVASSAFMSKAKALRKAVGMVMVEQYKEYNAIGSLRLIADSLLHSTPKDTLLPNPRSNLSFVYHRVLDLLSLLSFPRLRMVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKAAASEAQKAADKLANGVGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTALGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAEILAAQDDGGGESLECVYERLEALDASTAEKRAAEILHGLGFNKQMQAKKTRDFSGGWRMRIALARALFMKPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNRTLKLYTGNYDQYVQTRAELEENQMKQYRWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPTDGMVRRHNHLRIAQFHQHLAEKLDMEMPALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMEFKEHLREKAGLSD 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1115 702 ProSitePatterns ABC transporters family signature. 320 334 IPR017871 GO:0005524|GO:0016887
Lele10g1115 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 176 416 IPR003439 GO:0005524
Lele10g1115 702 CDD ABCF_EF-3 487 678 - -
Lele10g1115 702 Gene3D - 176 440 IPR027417 -
Lele10g1115 702 Pfam ABC transporter 194 348 IPR003439 GO:0005524
Lele10g1115 702 Gene3D - 456 700 IPR027417 -
Lele10g1115 702 FunFam ATP-binding cassette sub-family F member 3 447 701 - -
Lele10g1115 702 FunFam Abc transporter f family member 1 176 440 - -
Lele10g1115 702 Pfam ABC transporter 503 634 IPR003439 GO:0005524
Lele10g1115 702 CDD ABCF_EF-3 176 393 - -
Lele10g1115 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 418 IPR027417 -
Lele10g1115 702 SMART AAA_5 512 700 IPR003593 -
Lele10g1115 702 SMART AAA_5 200 402 IPR003593 -
Lele10g1115 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 487 702 IPR003439 GO:0005524
Lele10g1115 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 681 IPR027417 -
Lele10g1115 702 Pfam ABC transporter 387 463 IPR032781 -
Lele10g1115 702 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 117 697 - -
Lele10g1115 702 Coils Coil 394 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1115 Lele-ChrLele10 22526215 22531594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1115 196 374 Calmodulin-binding Proteins AT2G36910 25.397 1.61e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1115 10 22526215 22531594 Lele30g1134 30 14325164 14325475 CCT
Lele10g1115 10 22526215 22531594 Lele31g1271 31 18885419 18885730 CCT
Lele10g1115 10 22526215 22531594 Lele32g0262 32 1631312 1631623 CCT
Lele29g0272 29 1610927 1616641 Lele10g1115 10 22526215 22531594 CCT
Lele30g1142 30 14370301 14376052 Lele10g1115 10 22526215 22531594 CCT
Lele10g1115 10 22526215 22531594 Lele11g1148 11 18753950 18758529 hybridization
Lele10g1115 10 22526215 22531594 Lele12g0176 12 1359929 1363476 hybridization