Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1108 ATGTCGTCGCGACGGTCTGCCTTCGATGCTCTCATGTCAGGGGCTCGTGCCGCCGCCAAGAAAAAGCCCCAATCATCGTCGCCCCAGAAACGAAAAACTGCGGATTCTAATTCCACCCAAAACCCTAAACTCCTCAAGAGCACGGAAAGTACTGGTGAGTCTTCGGAACCCGGTAACGATACTAAATGCGTTGACATTAAAGATTCCGAGAAGGCACAAGAGCCGACAAAAGAAGACTTGAGCAATGGTGGGCTGACGGAGTCAGAGGGTGCACTAGCGGCGAAGAGAATGCGCGTTGTAGGTTCCCAGGAAAAGATTACTGAAATGAAGAAAAAAGTTTCTCTTATGAAGAAGAAGCCTGCAGATTTTGACCCTAGTTTAATATCTTGTTGTGACAAGGGTGAACCTGTGCCCTTTCTGTTTCTCAGTTTGGCATTTGATATGATTAATGTTGAAAAAGGACGGATAGTGATTACAGATATAGTGTGCAATATGTTGAGGACTATCATGAACACTACACCTGAGGATCTGGTAGCTGTTGTTTATCTTTCCACAAATAAGATTGCTCCGCCACATGAAGGGTTGGAATTGGGAATAGGAGATGCTTCAATTATCAAGGCGCTTGCAGAGGCATGTGGAAGAACTGAGACGCAGATAAGAAATCAGTATAAGGAACAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGTCGCTCATCTCAATCAATGATGCGGAAGCCTGATCCATTAACTATTAGGAAGGTTTTTAACACCTTTCGTCTTATTGCCAAGGAATCTGGTAAAGACAGCCAAGAGAAGAAAAAGAATCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATCTAATTCGTCTTCTTCAGTCAAAGTTGCGGATTGGTTATGGTGAGCAAACTCTCTTAGCTGCATTGGGCCAGGCTGCAGTATACACAGAAGGACATTCTGTACCACCTCCTGAAATTCAGTGCCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTATTCTGTTCTTCCTGTGTATGACAAAATAATTCTGGCATTGGTTAGTGGTGGTGTATGGAAACTTCCAGAGATGTGTAACTTCACTCCTGGTGTTCCAGTTGGACCTATGTTGTCTAAAGCAACTAAGGGTGTATCTGAAGTTCTAAATAAATTCCAGGATGCAGAGTTTACTTGTGAATACAAATATGATGGGGAGCGTGCTCAGATACATTACATGGATAATGGATCAGTTGAGATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGGTTAAAGAAATCATCTGTATCATCAGTTGTTCTCGATTGTGAACTTGTTGCATATGAACGAGAAAAAAAGAAAATTCTTCCTTTTCAGGTTCTCAGTACTCGAGCTCGGAAAAATGTTTCTCTGAGTGATATAAAAGTGGATGTATGCATATTTGCCTTTGATATCTTGTATCTTAATGGCAAGCCACTACTTCAGGAAACCCTAAAAATCAGGAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAACCTGGATTTCTTCAGTTTGCAACAACAATAACGTCAAACGATGTTGAGGAAATACAAAAGTTTCTCGATGCAGCAGTTGATGCTAGTTGTGAGGGTTTAATTATCAAAACTTTATATGAAGACGCTACATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGAAAATATAGGGGACTCGCTGGATTTGGTACCTATTGCTGCTTTTCATGGCCGTGGGAAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCCTGCTATGACAGCAATAATGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGAAGAACGTTCTTCAAGTCTTCGTTCTAAAGTGATCCCCAAACCAAAGCCTTATTATCGATATACAGAGACAATCAATCCTGATGTATGGTTTGAAGCCTCTGAGGTGTGGGAAGTGAAAGCAGCAGACTTGACCATTAGCCCTGTTCACCGTGCTGCAGTAGGCATAGTAGATTCAGATAAGGTTGCTGAAATGTATTCTGCTCAAAAGCACAGTCTCCAAAACAACCAGGATGATGAAGATTGA 2175 0.4198 MSSRRSAFDALMSGARAAAKKKPQSSSPQKRKTADSNSTQNPKLLKSTESTGESSEPGNDTKCVDIKDSEKAQEPTKEDLSNGGLTESEGALAAKRMRVVGSQEKITEMKKKVSLMKKKPADFDPSLISCCDKGEPVPFLFLSLAFDMINVEKGRIVITDIVCNMLRTIMNTTPEDLVAVVYLSTNKIAPPHEGLELGIGDASIIKALAEACGRTETQIRNQYKEQGDLGLVAKASRSSQSMMRKPDPLTIRKVFNTFRLIAKESGKDSQEKKKNHIKGLLVAATDCEPLYLIRLLQSKLRIGYGEQTLLAALGQAAVYTEGHSVPPPEIQCPLEEAAKIVKQVYSVLPVYDKIILALVSGGVWKLPEMCNFTPGVPVGPMLSKATKGVSEVLNKFQDAEFTCEYKYDGERAQIHYMDNGSVEIYSRNAERNTGKFPDVVAAISRLKKSSVSSVVLDCELVAYEREKKKILPFQVLSTRARKNVSLSDIKVDVCIFAFDILYLNGKPLLQETLKIRREHLYASFEEEPGFLQFATTITSNDVEEIQKFLDAAVDASCEGLIIKTLYEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPKPYYRYTETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKVAEMYSAQKHSLQNNQDDED 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1108 724 CDD Adenylation_DNA_ligase_I_Euk 370 587 - -
Lele10g1108 724 Pfam DNA ligase N terminus 138 313 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele10g1108 724 FunFam DNA ligase 589 706 - -
Lele10g1108 724 MobiDBLite consensus disorder prediction 1 96 - -
Lele10g1108 724 Gene3D - 390 589 - -
Lele10g1108 724 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 372 590 - -
Lele10g1108 724 Gene3D DNA ligase/mRNA capping enzyme 409 534 - -
Lele10g1108 724 ProSitePatterns ATP-dependent DNA ligase signature 2. 558 584 IPR016059 GO:0003909
Lele10g1108 724 MobiDBLite consensus disorder prediction 20 58 - -
Lele10g1108 724 FunFam DNA ligase 115 382 - -
Lele10g1108 724 Pfam ATP dependent DNA ligase C terminal region 609 695 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lele10g1108 724 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 21 704 - -
Lele10g1108 724 FunFam DNA ligase 409 534 - -
Lele10g1108 724 Gene3D - 115 382 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele10g1108 724 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 196 697 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lele10g1108 724 ProSiteProfiles ATP-dependent DNA ligase family profile. 486 622 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele10g1108 724 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 122 370 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele10g1108 724 CDD OBF_DNA_ligase_I 592 704 - -
Lele10g1108 724 Pfam ATP dependent DNA ligase domain 380 584 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele10g1108 724 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 404 412 IPR016059 GO:0003909
Lele10g1108 724 SUPERFAMILY Nucleic acid-binding proteins 592 703 IPR012340 -
Lele10g1108 724 MobiDBLite consensus disorder prediction 60 77 - -
Lele10g1108 724 Gene3D - 593 717 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1108 Lele-ChrLele10 22462819 22470856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1108 2 720 Core DNA Replication Machinery Family AT1G08130 66.400 0.0 1002