Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1107 ATGCTCAAAATGGATGCTCATCACCAAGACCCTCTGATGCAAATGAACGACTTCCAGCTTCATGACTTCATCGACGACACCAATTTCGATCAGTTTATCAATTTGCTCCGTGGCGGCGAGAATGAACACTCATTCTGTAACTTTGATTCTGACCTTATCGTCAATGGCTGCTTAGCTGCTGATAATAACCAGTTTCTTCCATTACCTACTGCAAACCCGTTATTTGAATCTAATAATGCTGCTGTAAATGCTTATGATCCAAGCTCTACGCTCAGTTCCTTCTCATGTTTTGATGGAGAAGTGGAGGGAGGAAGAGGAGGAGAAGAAGAGAATGATTCTTCTGCAACAATAATCACCACCACCACTGAAAATACATCTTCTGCTAATGCCAAACAGAAGTCCAAAACTGATCGCTCCAAGACTCTGATTTCTGAAAGGAGGAGAAGAGGCCGAATGAAGGAGAAGCTTTATGCGTTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATCGTGGGCGATGCTGTAGCATATGTGCAGGAGCTGCAAGAGACAGCTAAGAAGCTGAAGGCTGAGGTTAAAGGGCTTGAAGCATCTCTGGTAGCGTCAGAAAATGATAATAGATCAGCTAAAATTCCCATGAAGGTTCAAAACAACAACCACATCAACTATCCAATCTGCAAGAAGATCATGCAGATGGATATGTTTCAAGTGGAGGAAAGAGGGTTTTACGTGAAATTGGTTTGTAATAAAGGAGGAGGAGTGGCTGCCTCCTTGTACAGAGCTCTTGAGTCCCTAGCAGGCTTCGATGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGCTTTCTATTAGCATTTACATTGAATGTCAAAGGTTGCGAGCCAGAAATTAACCAGCAAAATCTGAAACTGTGGGTGGCGAGCGCTCTTCTAAACCATGGCTTTGAATTTATTCCAACTTTCCATGCTTGA 984 0.4299 MLKMDAHHQDPLMQMNDFQLHDFIDDTNFDQFINLLRGGENEHSFCNFDSDLIVNGCLAADNNQFLPLPTANPLFESNNAAVNAYDPSSTLSSFSCFDGEVEGGRGGEEENDSSATIITTTTENTSSANAKQKSKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVAYVQELQETAKKLKAEVKGLEASLVASENDNRSAKIPMKVQNNNHINYPICKKIMQMDMFQVEERGFYVKLVCNKGGGVAASLYRALESLAGFDVQNSNLATVSDSFLLAFTLNVKGCEPEINQQNLKLWVASALLNHGFEFIPTFHA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1107 327 MobiDBLite consensus disorder prediction 123 147 - -
Lele10g1107 327 Coils Coil 182 209 - -
Lele10g1107 327 MobiDBLite consensus disorder prediction 133 147 - -
Lele10g1107 327 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 16 317 - -
Lele10g1107 327 Pfam Helix-loop-helix DNA-binding domain 143 186 IPR011598 GO:0046983
Lele10g1107 327 SMART finulus 142 191 IPR011598 GO:0046983
Lele10g1107 327 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 132 202 - -
Lele10g1107 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 202 IPR036638 GO:0046983
Lele10g1107 327 Gene3D - 127 202 IPR036638 GO:0046983
Lele10g1107 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1107 Lele-ChrLele10 22453780 22455430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1107 12 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.393 2.84e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele10g1107 HLH 1.6e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0294 29 1739717 1742903 Lele10g1107 10 22453780 22455430 CCT
Lele30g1121 30 14245188 14248647 Lele10g1107 10 22453780 22455430 CCT
Lele10g1107 10 22453780 22455430 Lele11g1137 11 18661328 18662962 hybridization
Lele10g1107 10 22453780 22455430 Lele12g0185 12 1445416 1447070 hybridization