Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1104 ATGTCTGTTTCGTCTCTGTGTAAGCTAGTTAACATGGAAGGCCCGGAGGAATTAGAGTTTGTGGGGCCGTCGGATAATCATGCCACCGCCGTCACGCACATCGCCAAAGGCAAGCGTACCAAGAGGCACAGGCCCCTCTCGCCTTGTGCTGTCGTCGCCGCCACCACGACCTCTAGCTCATCGAGCGTCTCCGGGGAACACGTCAGCCCCAGTGGAGATTACGGTTCCGTTTCGTCCACCACGACCACGATCACTCATAATAATTATGACGAGAGCACTGAGGAAGAGGAAGACATGGCCAACTGTTTAATTCTCTTGGCTCAGAGTGGGGATTCCCATAATCTCAAGCACCGACCACCTCAATCTCAAGCCACCAGAACAGAATTACCGGGAGGAAGCCGGAGATTAGCCGAGATGCCCACCGTCACCGCAGCCGGTGCCGCCAAAGTTGGTTTGTTTATGTATGAGTGCAAAACGTGTAACCGAAGTTTTCCTTCGTTTCAAGCTTTGGGTGGGCATAGGGCCAGCCACAAAAAGCCTAAGCTGACGTTAGAGGAGAAGAAACTGCCGCCGCAGCCGCAACTTATCAACAGTTATGAGATTGAAGAAGCTCCGATTAAAAGCAGCCCTCAAATTTCTCTTCAATTAGGAAATAACATAAATGGGGTTGTGTCCATCAACAAGGCCAAGATTCACGAGTGTTCAATATGCGGGTCGGAATTCACGTCCGGGCAGGCACTGGGAGGCCACATGAGGAGGCACAGGGCATCCACATCAACCATTGGTGCGGCACCTCAGGCGAGTTATGACGGAGTCGCCGACAACACTAGGACGGTGGGGGCTGCTGTGGAAGTGAAGCCAAAATTTCTAGCTTTGGATCTAAACCTGCCGGCGCCGGAAGAGGATCATCATTATCAGCGGGATTCCAAGTTTGAGTTGAAGACAAAAGAGAAACCATTGGTGCTGTCTACTGCGTCATTGGTTGGCTGCCATTATTAG 999 0.5185 MSVSSLCKLVNMEGPEELEFVGPSDNHATAVTHIAKGKRTKRHRPLSPCAVVAATTTSSSSSVSGEHVSPSGDYGSVSSTTTTITHNNYDESTEEEEDMANCLILLAQSGDSHNLKHRPPQSQATRTELPGGSRRLAEMPTVTAAGAAKVGLFMYECKTCNRSFPSFQALGGHRASHKKPKLTLEEKKLPPQPQLINSYEIEEAPIKSSPQISLQLGNNINGVVSINKAKIHECSICGSEFTSGQALGGHMRRHRASTSTIGAAPQASYDGVADNTRTVGAAVEVKPKFLALDLNLPAPEEDHHYQRDSKFELKTKEKPLVLSTASLVGCHY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1104 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Lele10g1104 332 Gene3D Classic Zinc Finger 152 254 - -
Lele10g1104 332 Pfam C2H2-type zinc finger 232 256 - -
Lele10g1104 332 Pfam C2H2-type zinc finger 155 180 - -
Lele10g1104 332 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Lele10g1104 332 PANTHER ZINC FINGER PROTEIN ZAT5 44 318 - -
Lele10g1104 332 MobiDBLite consensus disorder prediction 56 80 - -
Lele10g1104 332 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Lele10g1104 332 SUPERFAMILY beta-beta-alpha zinc fingers 154 254 IPR036236 -
Lele10g1104 332 SMART c2h2final6 232 254 IPR013087 -
Lele10g1104 332 SMART c2h2final6 155 177 IPR013087 -
Lele10g1104 332 MobiDBLite consensus disorder prediction 114 129 - -
Lele10g1104 332 MobiDBLite consensus disorder prediction 112 133 - -
Lele10g1104 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1104 Lele-ChrLele10 22421241 22422239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1104 32 332 C2H2 Transcription Factor Family AT2G28200 44.514 9.18e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele10g1104 zf-C2H2_6 2.3e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1104 10 22421241 22422239 Lele11g1133 11 18635990 18636955 hybridization
Lele10g1104 10 22421241 22422239 Lele12g0188 12 1469896 1470852 hybridization