Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1102 ATGATTTCAAGAGCCATCACAGCGTCTGGTTTCTCAAATCTCTCTCATCAAGGCCTGCACAATATGTTTCCTCCTGCTGCTGATGATAATCTGGTTGAATCAGCTCCTTCTCAATCAAGCTCGCTCATGTTCAAGCTCTCTGTCCTCAAAGACAAACTTACTCATTTGCAGAATCTCGCAGGTATTCTCCTCTCCTCGGATCAGATCCTACCAGACTCAACATGTACAACGTTAGCCAGTATGAATTCTATAATCCAGGAGTTCATAGTCACTGCCTCTTCCATGATGCTCACGTGCCAACACATGGTCCTTAATTTCTCTCCACCACCACCAGCAGGTACTCATCATTGCACAGAATCCAACTTTGGCAATTATACAACTAGTATTACAAATAACATAGCTCAACAAAGAGGGTCGCAAGGTATCTTCTCTAGTCCTAATGATCAAAGATTGGACTGGTTCGCTGGTGAAAGCTATGATAATAATCTCAAGGATGATGATCCGAGTGTTGGAATTATTGAAACGAAGAGAGAATTGTGTCAAGGAGATGAAACCAACGAAGCAAAGAACGAAGACATGATTATTGAATTGGATGCTGCTGATTTGTTGGCAAAGTACACGCATTACTGTCAGATTTGTGGGAAAGGGTTTAAACGAGATGCGAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGACAAGTGCGGCTTTGAGCAATCCGATGAAGAAGAATAGAGATAAAGAATGTTCGATGAGCAACACTACTTTTAGGCCTAAGAAATATTCATGTCCACAAGAAGGATGTAGGTGGAATCAGAAACATGCAAAGTTTCAACCTTTGAAGTCAATGATATGTGTGAAGAATCACTACAAGAGAAGTCATTGTCCGAAGATGTACGTGTGTAAGAGGTGCAATTTGAAGCAGTTCTCGGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAATGGCAGTGTTCGTGTGGTACAACGTTTTCAAGGAAAGACAAGCTCATGGGCCATGTTGCTTTGTTCGTTGGCCATGCTCCAGCTGTCGGCGGTGGCTTGTCGTATTCTAGAAAATTGCAACTGCAGGAAGATGGTAGTTCATCAAGATGA 1137 0.4266 MISRAITASGFSNLSHQGLHNMFPPAADDNLVESAPSQSSSLMFKLSVLKDKLTHLQNLAGILLSSDQILPDSTCTTLASMNSIIQEFIVTASSMMLTCQHMVLNFSPPPPAGTHHCTESNFGNYTTSITNNIAQQRGSQGIFSSPNDQRLDWFAGESYDNNLKDDDPSVGIIETKRELCQGDETNEAKNEDMIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKKNRDKECSMSNTTFRPKKYSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHAPAVGGGLSYSRKLQLQEDGSSSR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1102 378 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 34 358 IPR044300 GO:0010044|GO:0010447
Lele10g1102 378 Gene3D Classic Zinc Finger 300 350 - -
Lele10g1102 378 SUPERFAMILY beta-beta-alpha zinc fingers 206 233 IPR036236 -
Lele10g1102 378 SMART c2h2final6 208 230 IPR013087 -
Lele10g1102 378 SMART c2h2final6 302 324 IPR013087 -
Lele10g1102 378 SMART c2h2final6 264 297 IPR013087 -
Lele10g1102 378 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Lele10g1102 378 Gene3D Classic Zinc Finger 185 268 - -
Lele10g1102 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Lele10g1102 378 FunFam Zinc finger protein 574 207 232 - -
Lele10g1102 378 Pfam Zinc finger, C2H2 type 208 230 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1102 Lele-ChrLele10 22406215 22407351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1102 39 359 C2H2 Transcription Factor Family AT5G22890 50.432 1.51e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele10g1102 zf-C2H2 9.7e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1102 10 22406215 22407351 Lele29g0301 29 1785465 1786334 CCT
Lele10g1102 10 22406215 22407351 Lele30g1114 30 14197189 14198088 CCT
Lele10g1102 10 22406215 22407351 Lele31g1248 31 18747822 18748691 CCT
Lele10g1102 10 22406215 22407351 Lele32g0280 32 1749627 1750532 CCT
Lele10g1102 10 22406215 22407351 Lele11g1131 11 18624400 18625554 hybridization
Lele10g1102 10 22406215 22407351 Lele12g0190 12 1487196 1488347 hybridization