Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1094 ATGGCTATTGCTGGACTACATAATCTGTCTGTGCTTGACTCTTCTTTTCTTAGGGATTCCCATTCTCAATCACCTAGGAGGCGAGTAGATGGAGGGAGTGAAAGCACCCGATCTTCTTCAATCTTGCAAATGTGGCGAGATATTGAGGATGAGCATGTGGTGGGTCAAGTCCAAGGAAGACCTGGTGATGGATTACTTCAGCAAAGGAGTGATGAGTTTATCGCTGACCTCTCACAGGCAAGTATGCCAGGTAGCCATGAGATAGGAGAGAGGCTTGTGGTAGAAGATTCAATTTTGGGCGAGAATGATTGTGAAACATGGTCACAGTCACAGAGTCAGCGTGAATCTCCTGATGAGCATGAGGAATTAAACAATTCTACTTGTGATAATTCTTCTGATCTTGGACAAGGTGAAAGGGAAAGGGTGAGGCAAATTTTCAGGGAATGGATGAAGAGTGGTGCTGGGGATCAAGCCACAAATAGTCCCCAAGGTAATAGGAGTTCAAGATCAGAATGGCTTGGTGAAACTGAGCAGGAGAGGGTGAGAATCATAAGGGAGTTGGTACAATCAAGTAGCCAGCAGAGAGTTATTTCTTCTGGGGACAACAGGGAAGAACAATCAGCTGAATTTGGTACCCAAATAGAACGAGTTCGTGATGGATTTGTTGTTAATCAGAGTGAGGGTCAGACTGAGCATATGCGAAGGGGTATTCGTAAATTATGTGGCAGACAGGTTCTGCTTGATATGCTTAAGAAGGCTGAGAGGGAAAGACAAAGAGAAGTTCAGGAATTATTGGACCATAGAGCTGTATCTCATTTCCCCCACCGCAACCGCATTCAGGCATTGCTCAGGGGCAGGTTCTTGAGAAATGACAGATCAATTGATGTTAACCGGTCCACTTCCATAGCTGAAAGTGAATTAGGCTTACTGAGGCAAAAACAGACTGTATCAGGTCTAAGGGAAGGGTTTTTCTCTGGGAAGGACAATTCTGGTGGCAGTCAAGTAACTTGCACTCTATCAGATACCTCATCTAACAGTGGCATTGATAATAATTCAAATGAACAAGCTGATTCCAGCAGTTTACATTCGGTCTCAATTGTACATTTTGAACAGTCTGAACCTACCATAGGAAGTAGCGATGGGGCTGGGATCTTAGATGGTCAGAATTTTACACAAGAAACCATCACGGAAAATTTAGATTGTCAAGACTCCACTGCTCATATAGAAGGAAGGTCGTCACAGCTTTTGGAAAATGAGTCAAGAGATTGTCAATCGTCATCCAGTGTTGGGATGGAAAGAAGATATGATACCGGGCTATATGTTGCTGGGATGACAGTTGAAGATACCTCCGATAGACTTATGCAACAAAATTATCAGAATGAAGTTACTGACCATAGCAGTATGCAGGGTTCTAGTGAGGCATATCCTGAAGAATTTGAGCCAAGTGTCATAAGCAATGATGATAACGTTTCATCAACTCTTAGTGATGTTATGGAAGCCACTATGGTAGATAATGAAAATAGGTATGTATCTACTGCTACAGAAGAACAGCAACAGGAAGAACTTATTGAAAATGAAGGAAGTGATGGGCACCTGAGAAATGGCACAGAGGAAAGCCTGGATGATAATCATCTCAGTGGTACAACCAATGAATGGCCTCAAGACATTTTGGGCAATGAAGATGAGGAAAACTCTCATCTACCAGAAGCCCCTGAAATTTGGCAAGAAGATAGTGGCTTTCAGGAGGCTGTGGAAAATTGGTTGGGTGGACCTTCTGATCATGAAGTTGCTCCAGTTGGTAGAATTCATGGCTTTTACTTTCCAGATGATGACAATGTGAACAGTGTGGAACTCAGGGAACTGCTAAATAGGAGAAGTGTTTCTAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCATGTTGAGTGGGAGCTGCAAGAAACAACCCCTTCTTCTGCCTCAGTTGAACAGGACCTGGAGCAGCCACGTAGGGATCAGATTGTTGGTCAGGAGGATACTATCAACAGTCCACTTGACCAACCCTCATCGCCAACACCTCCTCAACCTCTCTGGGAACGACATTCACGTCATGACAATTGGTCACAAGCTGACATGAATAATCGGCGTCTAGGAATTGGGCATTCATTTTCTATGGAGTGGGAGATTATCAATGACTTGAGAATTGACATGGCTAGGCTACAGCAAAGAATGAATAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAGGAGGTTTCTGCAGCCCTAAATCGCTCAGCTGGTTCATCAGATATGCTTGACCATGATTCACCTGATGACAAGTCTAAATGGGAATGTGTGAGAAAAGGACTATGCTGTGTATGCTGTGAGAGCAATATTGATTCTTTGTTGTACAGATGCGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTGTTCCAAAGTAGGAGAAAGTGTCCAATGTGTCAAGCGCCTGTTGTGGAGGTGATACGTGCTTATTCCATAGTATAA 2586 0.4362 MAIAGLHNLSVLDSSFLRDSHSQSPRRRVDGGSESTRSSSILQMWRDIEDEHVVGQVQGRPGDGLLQQRSDEFIADLSQASMPGSHEIGERLVVEDSILGENDCETWSQSQSQRESPDEHEELNNSTCDNSSDLGQGERERVRQIFREWMKSGAGDQATNSPQGNRSSRSEWLGETEQERVRIIRELVQSSSQQRVISSGDNREEQSAEFGTQIERVRDGFVVNQSEGQTEHMRRGIRKLCGRQVLLDMLKKAERERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRSIDVNRSTSIAESELGLLRQKQTVSGLREGFFSGKDNSGGSQVTCTLSDTSSNSGIDNNSNEQADSSSLHSVSIVHFEQSEPTIGSSDGAGILDGQNFTQETITENLDCQDSTAHIEGRSSQLLENESRDCQSSSSVGMERRYDTGLYVAGMTVEDTSDRLMQQNYQNEVTDHSSMQGSSEAYPEEFEPSVISNDDNVSSTLSDVMEATMVDNENRYVSTATEEQQQEELIENEGSDGHLRNGTEESLDDNHLSGTTNEWPQDILGNEDEENSHLPEAPEIWQEDSGFQEAVENWLGGPSDHEVAPVGRIHGFYFPDDDNVNSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETTPSSASVEQDLEQPRRDQIVGQEDTINSPLDQPSSPTPPQPLWERHSRHDNWSQADMNNRRLGIGHSFSMEWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSDMLDHDSPDDKSKWECVRKGLCCVCCESNIDSLLYRCGHMCTCSKCANELFQSRRKCPMCQAPVVEVIRAYSIV 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1094 861 MobiDBLite consensus disorder prediction 154 171 - -
Lele10g1094 861 MobiDBLite consensus disorder prediction 511 567 - -
Lele10g1094 861 Coils Coil 737 764 - -
Lele10g1094 861 MobiDBLite consensus disorder prediction 104 137 - -
Lele10g1094 861 MobiDBLite consensus disorder prediction 20 39 - -
Lele10g1094 861 Pfam Zinc finger, C3HC4 type (RING finger) 806 853 - -
Lele10g1094 861 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 860 - -
Lele10g1094 861 MobiDBLite consensus disorder prediction 686 713 - -
Lele10g1094 861 SUPERFAMILY RING/U-box 808 854 - -
Lele10g1094 861 MobiDBLite consensus disorder prediction 339 360 - -
Lele10g1094 861 MobiDBLite consensus disorder prediction 541 555 - -
Lele10g1094 861 MobiDBLite consensus disorder prediction 151 175 - -
Lele10g1094 861 MobiDBLite consensus disorder prediction 524 540 - -
Lele10g1094 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 859 IPR013083 -
Lele10g1094 861 Coils Coil 243 270 - -
Lele10g1094 861 CDD mRING-HC-C3HC5_NEU1 809 847 - -
Lele10g1094 861 ProSiteProfiles Zinc finger RING-type profile. 809 848 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1094 Lele-ChrLele10 22351578 22355246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1094 809 855 C3H Transcription Factor Family AT3G06140 38.298 6.09e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1094 10 22351578 22355246 Lele29g0305 29 1810672 1811445 CCT
Lele10g1094 10 22351578 22355246 Lele30g1110 30 14167077 14167847 CCT
Lele10g1094 10 22351578 22355246 Lele31g1244 31 18716667 18717440 CCT
Lele31g1251 31 18763435 18767060 Lele10g1094 10 22351578 22355246 CCT
Lele30g1115 30 14206287 14208031 Lele10g1094 10 22351578 22355246 CCT
Lele10g1094 10 22351578 22355246 Lele11g1126 11 18581931 18589186 hybridization
Lele10g1094 10 22351578 22355246 Lele12g0199 12 1527527 1532544 hybridization