Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1075 ATGGCGTTGTCGGGGATGAGAGGTCTCTCCGTCTTTATCAGTGACATCCGCAATTGTCAGAACAAAGAGCAGGAAAGGCTCCGGGTCGACAAGGAGCTGGGAAACATCCGAACCCGCTTCAAAAACGAAAAGGGTTTGACACCGTATGAAAAGAAGAAATATGTTTGGAAAATGCTATACGTATATATGCTTGGGTATGATGTGGATTTTGGTCATATGGAAGCCGTATCTCTAATATCTGCTCCAAAATATCCAGAAAAGCAGGTTGGGTACATTGTGACATCGTCTTTACTCAATGAGAACCATGACTTTTTGAGACTGGCAATAAATACTGTGCGCAATGATATTATTGGTCGCAATGAAACTTTCCAGTGCCTCGCATTGACTATGGTTGGAAATATAGGTGGGAGAGAGTTTGCCGAGTCCTTAGCACCTGATGTACAGAAGTTACTGATATCTAGCAGCTGCAGACCACTTGTGAGAAAAAAAGCTGCTCTGTGTTTACTGCGCTTGTATAGGAAAAATCCAGATGTTGTCAATGTAGATGGATGGGCGGATCGGATGGCACAACTTATGGATGAACGAGATCTTGGAGTTTTGACATCTTCTATGAGCCTTCTTGTTGCATTAGTATCTAACAACCATGAAGCATATTGGAGTTGTCTTCCAAAGTGTGTCAAAGTTCTAGAGCGTCTTGCTAGGAACCAGGATGTTCCGCAAGAATATACTTACTATGGTATCCCATCTCCCTGGCTTCAGGTAAAAACAATGAGAGCACTTCAATATTTCCCTACCATTGAAGATCCAAATACAAGGAGATCTTTGTTTGAGGTCTTACAAAGGATACTGATGGGCACAGATGTTGTGAAAAATGTGAACAAAAACAATGCATCCCATGCTGTTCTTTTTGAAGCACTTGCTCTGGTGATGCATCTTGATGCTGAGAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGGGAGCCAAACATTAGATATCTTGGCTTGGAGAATATGACAAGAATGTTGATGGTTACAGATGTGCAAGATATCATAAAAAGGCATCAAGCTCAGATAATTACCTCATTGAAAGATCCAGATATCAGTATTCGGCGGCGTGCTCTTGATTTACTTTATGGCATGTGTGATGTTTCAAATGCAAAGGATATAGTTGAAGAACTTTTGCAGTATCTCAGCACAGCTGAATTTGCAATGAGAGAGGAATTGTCACTTAAAGCTGCCATTCTTGCTGAGAAGTTTGCTCCAGATCTTTCATGGTATGTTGATGTCATTCTTCAATTGATTGACAAAGCTGGAGATTTTGTTAGTGATGACATCTGGTTTCGTGTGGTGCAATTTGTCACAAACAATGAGGACCTACAGCCTTATGCTGCAGCAAAAGCTCGAGAGTATCTTGATAAACCAGCCATACATGAGACAATGGTTAAGGTCAGTGCGTATATCATTGGAGAATTTGGACACCTTCTGGCTAGAAGACCTGGGTGTAGTCCAAAGGAATTATTTGGCGTAATACATGAGAAGCTTCCTTCTATATCGATTCCATCTATTCCTATTCTTCTTTCAACATATGCTAAAATTCTTATGCACACTCAACCACCAGACCCAGAACTTCAGAATCAGATACGGGCGATATTTAACAAATACGGGAGTTGCATTGATGTTGAGATACAGCAAAGAGCTGTTGAATATCTTACATTGAGTAGTAAAGGTGAAGCTCTGATGGACATATTAGCTGAAATGCCTAAATTCCCTGAACGACAGTCTGCATTGATAAAAAAAGCTGAAGATCCTGAACTTGATTCTGCGGAACAAAGTGCCATAAAATTGCGAGCCCAGCAGCAAGCTCAAACATCAAATGCGTTGGTTGTAACTGACCAACATACTGCAAATGGAACACTGCCTGTAAACCAACTTGGTCCTGTGAAGATGCCCAGCATGAGCAGTACTGTGGACCATGATTCAGCAGATCAACAATTATCCCTGGAAAATGGGACATCAAGTAATGTAGATTCTCAACCTCCTACTGCAGATCTCCTTAGTGATATCTTGGGTCCATTAGCTATTGAAGGTCCTCCCAGTGGCAGTGTCCAGTCTCAGCCAAACACAAATTCAGGATTGGAAGGTACTGCAGTTGAAGCCACAGCCATTGTACCTGCAGGAGAGCAGGCAAACTCTGTGCAGCCAATTGGAAATATTGCAGAAAGATTTCATGCGTTGTGCATGAAGGATAGTGGTGTTCTTTATGAGGATCCTTATATTCAGATTGGCATTAAAGCAGAATGGAGAGCACATCATGGGCGTCTTGTCCTTTTCTTAGGGAATAAGAATACTTCTCCTCTTGTCTCTGTTCAAGCTATGATATTGCCTCCATCTCATTTGAAGATGGAGCTCTCACTAGTGCCAGAAACTATACCTCCCCGAGCACAGGTGCAATGCCCACTTGAAGTCATTAATCTTCACCCGAGCAGGGATGTGGCTGTTCTTGACTTCTCCTACAAGTTTAGTAACGATATGGTCAATGTCAAACTTCGCCTTCCAGCTGTCCTAAATAAGTTTCTTCAGCCTCTCACTGTATCTTCTGAAGAGTTTTTCCCTCAATGGAGATCACTTTCTGGGCCACCTTTGAAGCTTCAAGAAGTGGTTAGAGGTGTTAAACCACTTCCGCTGGTTGAAATGGCGAATTTATTCAATAGTTACCGTTTGTCAATTTGCCCAGGGCTTGATCCCAATCCAAACAATCTTGTTGCGAGTACAACATTCTATTCAGAAACTACACGGGCAATGCTCTGTTTAATGCGAATTGAAACGGACCCAGCTGACAGAACCCAGCTACGGATGACAGTCGGTTCAGGGGATCCTACCCTAACGTTTGAGTTGAAGGAGTTCATCAAGGAACTGTTAATCAGTTTGCCCCCAGCAACCCCTGCACCAATGCAAGCATCTCCAATGCCTCCGGTGGCTCAACCTGTTAGCATGCCTCCAGCGCCTGTAGCATCAAACGACCCTGGAGCGATGCTGGCTGCTCTTCTATGA 3072 0.4284 MALSGMRGLSVFISDIRNCQNKEQERLRVDKELGNIRTRFKNEKGLTPYEKKKYVWKMLYVYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSSLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLLISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLMDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCVKVLERLARNQDVPQEYTYYGIPSPWLQVKTMRALQYFPTIEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLMVTDVQDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTAEFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYIIGEFGHLLARRPGCSPKELFGVIHEKLPSISIPSIPILLSTYAKILMHTQPPDPELQNQIRAIFNKYGSCIDVEIQQRAVEYLTLSSKGEALMDILAEMPKFPERQSALIKKAEDPELDSAEQSAIKLRAQQQAQTSNALVVTDQHTANGTLPVNQLGPVKMPSMSSTVDHDSADQQLSLENGTSSNVDSQPPTADLLSDILGPLAIEGPPSGSVQSQPNTNSGLEGTAVEATAIVPAGEQANSVQPIGNIAERFHALCMKDSGVLYEDPYIQIGIKAEWRAHHGRLVLFLGNKNTSPLVSVQAMILPPSHLKMELSLVPETIPPRAQVQCPLEVINLHPSRDVAVLDFSYKFSNDMVNVKLRLPAVLNKFLQPLTVSSEEFFPQWRSLSGPPLKLQEVVRGVKPLPLVEMANLFNSYRLSICPGLDPNPNNLVASTTFYSETTRAMLCLMRIETDPADRTQLRMTVGSGDPTLTFELKEFIKELLISLPPATPAPMQASPMPPVAQPVSMPPAPVASNDPGAMLAALL 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1075 1023 SUPERFAMILY Clathrin adaptor appendage domain 737 864 IPR013041 -
Lele10g1075 1023 SMART alpha_adaptinc2 750 859 IPR008152 GO:0006886|GO:0016192
Lele10g1075 1023 Pfam Adaptin C-terminal domain 757 852 IPR008152 GO:0006886|GO:0016192
Lele10g1075 1023 Gene3D - 866 979 IPR012295 -
Lele10g1075 1023 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 11 957 - -
Lele10g1075 1023 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 865 980 IPR009028 GO:0006886|GO:0016192|GO:0030117
Lele10g1075 1023 PIRSF AP2_alpha 1 982 IPR017104 GO:0015031|GO:0030122|GO:0035615|GO:0072583
Lele10g1075 1023 Pfam Adaptin N terminal region 28 582 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lele10g1075 1023 Gene3D - 737 865 - -
Lele10g1075 1023 Gene3D - 2 611 IPR011989 -
Lele10g1075 1023 MobiDBLite consensus disorder prediction 643 667 - -
Lele10g1075 1023 FunFam AP-2 complex subunit alpha 1 611 - -
Lele10g1075 1023 SUPERFAMILY ARM repeat 5 585 IPR016024 -
Lele10g1075 1023 Pfam Alpha adaptin AP2, C-terminal domain 865 973 IPR003164 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1075 Lele-ChrLele10 22104531 22116269 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1075 10 22104531 22116269 Lele11g1108 11 18353208 18365751 hybridization
Lele10g1075 10 22104531 22116269 Lele12g0212 12 1747038 1759260 hybridization