Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele10g1071 | ATGGAGTTCTGGGGTGTCGAGGTTAAGGCTGGGGAGTCTGTTAAAGTTGATCCTCAAGAGTTTGATGCCTACATTCATCTTTCTCAGGCTGCCCTTGGTGAGACAAAGAAAGATAAGGGAGCTGAACATGTGGTCCTTTACTTAAAATTTGATGACCAAAAGTTTGTTTTGGGAACCCTTTCAAAGGATAACTTCCCCCAGATATCGTTTGACTTAGTTTTGGAAAAGGAGTTTGAGCTCTCCCACAATTCAAAAAATGGCAGCGTCTTTTACTGAAAAGCTGATGCTAAGACTGCCCTAGCTAAGATTGCAGCATCCAAAAAAAGTGATGCCCGTGCTAATGATTCCAAAAAGCAAGGCAAGGTTGATCCAAAGAATGAGGATGACGATTCTGAAGATGAATCTGATGATGAAGATGATGAAGACGGAGATTCTGATGAGGATATGCTGGATGGTGAAAGTGATAGTAATGACGAGAGTGATGATGATGAAGATGATGAGGAGACTCCCAAGAAGCCGGATCTGAGTAAGAAGAGACCCAATGATTCTGCATTAAAAACTCCAGTTTCTGCCAAGAAAGCTAAAACTGGTACTCCTGAAAAGAAAGATGCTAAGAAAGGTGGTTATACCGCAACTCCTCACCCAATGAAGAAGGGTGGAAAGACTCCTAACGGTGATGCCAAGGAGCCTAAGTCTGGTGGACACTTGTCCTGCAAATCTTGCAGCAAGACTTTCAACTCTGAAAGTGGTCTTCAACAACATAAAAAGGCAAAGCACAGTGGTCAGTGA | 789 | 0.4284 | MEFWGVEVKAGESVKVDPQEFDAYIHLSQAALGETKKDKGAEHVVLYLKFDDQKFVLGTLSKDNFPQISFDLVLEKEFELSHNSKNGSVFYXKADAKTALAKIAASKKSDARANDSKKQGKVDPKNEDDDSEDESDDEDDEDGDSDEDMLDGESDSNDESDDDEDDEETPKKPDLSKKRPNDSALKTPVSAKKAKTGTPEKKDAKKGGYTATPHPMKKGGKTPNGDAKEPKSGGHLSCKSCSKTFNSESGLQQHKKAKHSGQ | 262 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele10g1071 | 262 | FunFam | Histone deacetylase HDT1 | 1 | 99 | - | - | |
Lele10g1071 | 262 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 238 | 259 | IPR013087 | - | |
Lele10g1071 | 262 | Gene3D | Nucleoplasmin core domain | 1 | 92 | - | - | |
Lele10g1071 | 262 | MobiDBLite | consensus disorder prediction | 237 | 251 | - | - | |
Lele10g1071 | 262 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 236 | 262 | IPR013087 | - | |
Lele10g1071 | 262 | MobiDBLite | consensus disorder prediction | 111 | 126 | - | - | |
Lele10g1071 | 262 | MobiDBLite | consensus disorder prediction | 127 | 169 | - | - | |
Lele10g1071 | 262 | Pfam | Nucleoplasmin-like domain | 3 | 83 | IPR041232 | - | |
Lele10g1071 | 262 | MobiDBLite | consensus disorder prediction | 111 | 262 | - | - | |
Lele10g1071 | 262 | SUPERFAMILY | beta-beta-alpha zinc fingers | 219 | 256 | IPR036236 | - | |
Lele10g1071 | 262 | SMART | c2h2final6 | 236 | 259 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele10g1071 | Lele-ChrLele10 | 22048581 | 22050999 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele10g1071 | 1 | 254 | C2H2 Transcription Factor Family | AT3G44750 | 41.288 | 1.53e-43 | 146 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lele10g1071 | NPL | 3.6e-12 | CL0055 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele29g0314 | 29 | 1897110 | 1900429 | Lele10g1071 | 10 | 22048581 | 22050999 | CCT | |
Lele30g1094 | 30 | 14072131 | 14075434 | Lele10g1071 | 10 | 22048581 | 22050999 | CCT | |
Lele10g1071 | 10 | 22048581 | 22050999 | Lele11g1104 | 11 | 18312679 | 18314768 | hybridization | |
Lele10g1071 | 10 | 22048581 | 22050999 | Lele12g0215 | 12 | 1795490 | 1798238 | hybridization |