Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1071 ATGGAGTTCTGGGGTGTCGAGGTTAAGGCTGGGGAGTCTGTTAAAGTTGATCCTCAAGAGTTTGATGCCTACATTCATCTTTCTCAGGCTGCCCTTGGTGAGACAAAGAAAGATAAGGGAGCTGAACATGTGGTCCTTTACTTAAAATTTGATGACCAAAAGTTTGTTTTGGGAACCCTTTCAAAGGATAACTTCCCCCAGATATCGTTTGACTTAGTTTTGGAAAAGGAGTTTGAGCTCTCCCACAATTCAAAAAATGGCAGCGTCTTTTACTGAAAAGCTGATGCTAAGACTGCCCTAGCTAAGATTGCAGCATCCAAAAAAAGTGATGCCCGTGCTAATGATTCCAAAAAGCAAGGCAAGGTTGATCCAAAGAATGAGGATGACGATTCTGAAGATGAATCTGATGATGAAGATGATGAAGACGGAGATTCTGATGAGGATATGCTGGATGGTGAAAGTGATAGTAATGACGAGAGTGATGATGATGAAGATGATGAGGAGACTCCCAAGAAGCCGGATCTGAGTAAGAAGAGACCCAATGATTCTGCATTAAAAACTCCAGTTTCTGCCAAGAAAGCTAAAACTGGTACTCCTGAAAAGAAAGATGCTAAGAAAGGTGGTTATACCGCAACTCCTCACCCAATGAAGAAGGGTGGAAAGACTCCTAACGGTGATGCCAAGGAGCCTAAGTCTGGTGGACACTTGTCCTGCAAATCTTGCAGCAAGACTTTCAACTCTGAAAGTGGTCTTCAACAACATAAAAAGGCAAAGCACAGTGGTCAGTGA 789 0.4284 MEFWGVEVKAGESVKVDPQEFDAYIHLSQAALGETKKDKGAEHVVLYLKFDDQKFVLGTLSKDNFPQISFDLVLEKEFELSHNSKNGSVFYXKADAKTALAKIAASKKSDARANDSKKQGKVDPKNEDDDSEDESDDEDDEDGDSDEDMLDGESDSNDESDDDEDDEETPKKPDLSKKRPNDSALKTPVSAKKAKTGTPEKKDAKKGGYTATPHPMKKGGKTPNGDAKEPKSGGHLSCKSCSKTFNSESGLQQHKKAKHSGQ 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1071 262 FunFam Histone deacetylase HDT1 1 99 - -
Lele10g1071 262 ProSitePatterns Zinc finger C2H2 type domain signature. 238 259 IPR013087 -
Lele10g1071 262 Gene3D Nucleoplasmin core domain 1 92 - -
Lele10g1071 262 MobiDBLite consensus disorder prediction 237 251 - -
Lele10g1071 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 262 IPR013087 -
Lele10g1071 262 MobiDBLite consensus disorder prediction 111 126 - -
Lele10g1071 262 MobiDBLite consensus disorder prediction 127 169 - -
Lele10g1071 262 Pfam Nucleoplasmin-like domain 3 83 IPR041232 -
Lele10g1071 262 MobiDBLite consensus disorder prediction 111 262 - -
Lele10g1071 262 SUPERFAMILY beta-beta-alpha zinc fingers 219 256 IPR036236 -
Lele10g1071 262 SMART c2h2final6 236 259 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1071 Lele-ChrLele10 22048581 22050999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1071 1 254 C2H2 Transcription Factor Family AT3G44750 41.288 1.53e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele10g1071 NPL 3.6e-12 CL0055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0314 29 1897110 1900429 Lele10g1071 10 22048581 22050999 CCT
Lele30g1094 30 14072131 14075434 Lele10g1071 10 22048581 22050999 CCT
Lele10g1071 10 22048581 22050999 Lele11g1104 11 18312679 18314768 hybridization
Lele10g1071 10 22048581 22050999 Lele12g0215 12 1795490 1798238 hybridization