Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1048 ATGTACAGCAACTTTAAGGAGCAAGCGATAGAATACGTTAAACAAGCTGTGCAGGAAGACAATGCTGGGAATTATGCAAAAGCGTTTCCTTTGTATATGAACGCTTTAGAGTATTTCAAGACCCATTTGAAGTATGAGAAAAACCCCAAGATTAAAGAAGCAATTACCCAGAAATTCACCGAGTATCTGCGGCGGGCTGAGGAGATCCGAGCTGTTCTTGACGACGGAGGGCCTGGCCCGGCGTCCAATGGGGATGCTGCAGTAGCTACGAGGCCGAAGACAAAGCCGAAGGACGGGGAAGGTGATGGGGAAGATCCAGAGCAATCCAAGCTCAGGGCTGGGCTGAATTCAGCGATCATTAGGGAGAAACCTAATGTGAAGTGGAATGATGTTGCTGGGTTGGAAAGCGCGAAGCAAGCATTGCAGGAGGCGGTTATCTTGCCCGTCAAGTTCCCCCAATTCTTTACCGGTAAAAGACGGCCTTGGAGAGCATTTCTGTTGTATGGCCCACCTGGTACAGGGAAATCATATTTGGCTAAGGCTGTTGCAACTGAAGCTGACTCCACATTTTTCAGTATTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTATCAAACCTTTTCCAAATGGCCCGCGAAAGTGCCCCTTCCATCATATTTATTGATGAAATAGATTCTCTATGTGGTCAGCGTGGTGAAGGCAATGAGAGTGAAGCTTCTAGACGAATCAAAACTGAACTTCTAGTGCAGATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTACTTGCAGCAACAAACACGCCTTATGCTTTAGATCAGGTGCATTTAGGAGATACTCCTCATAACTTGAGTGAAAGTGATTTTGAGCACTTGGCTCGCAGGACAGAGGGGTTTTCTGGTTCAGATGTTTCTGTCTGTGTCAAGGATGTTTTATTTGAGCCTGTTCGTAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCCGAGGGCATGTGGATCCCTTGTGGACCAAAGCAAGAGGGTGCAGTTCAAGTGACAATGCAGGATCTAGCCTCAAAAGGACTCGCTTCCAAGATTCTTCCACCGCCTATTACAAGAGCAGATTTTGATAAGGTGCTTGCTAGACAAAGGCCTACTGTAAGCAAAGCTGACCTTGAGGTTCATGAGAGATTCACGAAAGAGTTTGGAGAGGAGGGTTGA 1224 0.4608 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGDGEDPEQSKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQVHLGDTPHNLSESDFEHLARRTEGFSGSDVSVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQEGAVQVTMQDLASKGLASKILPPPITRADFDKVLARQRPTVSKADLEVHERFTKEFGEEG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1048 407 Gene3D - 124 280 IPR027417 -
Lele10g1048 407 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Lele10g1048 407 Pfam Vps4 C terminal oligomerisation domain 340 404 IPR015415 -
Lele10g1048 407 SUPERFAMILY MIT domain 2 81 IPR036181 -
Lele10g1048 407 MobiDBLite consensus disorder prediction 91 109 - -
Lele10g1048 407 CDD AAA 132 280 - -
Lele10g1048 407 FunFam Vacuolar protein sorting-associated protein 4 124 284 - -
Lele10g1048 407 FunFam vacuolar protein sorting-associated protein 4A 277 387 - -
Lele10g1048 407 Gene3D - 6 75 - -
Lele10g1048 407 CDD MIT_VPS4 4 77 IPR045253 -
Lele10g1048 407 Pfam ATPase family associated with various cellular activities (AAA) 166 281 IPR003959 GO:0005524|GO:0016887
Lele10g1048 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 390 IPR027417 -
Lele10g1048 407 SMART smart 2 79 IPR007330 -
Lele10g1048 407 MobiDBLite consensus disorder prediction 73 110 - -
Lele10g1048 407 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Lele10g1048 407 PANTHER AAA DOMAIN-CONTAINING 282 405 - -
Lele10g1048 407 Gene3D - 281 383 - -
Lele10g1048 407 SMART AAA_5 161 310 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1048 Lele-ChrLele10 21780301 21783709 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1048 160 328 Calmodulin-binding Proteins AT3G56690 33.673 5.15e-27 112