Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1041 ATGAATTTGAGGGAATATCACAGTGTACATGACAAGAGAGTGAACTTTCATACTCCAACTTTCTTTGAATGGCTCAAACCATCTTCATATCATCCTCCTACTACTTCATCATCATCTTCTGTGATTCATGATCAAGAGACTATTCAGTTTTTGCCAATTTTAACTGAAAAGCCCTCAAAAGATCAGGAAGGCTATAGGACTATTGGAGTAATTAAAGAGAAGAACGACGACGACGTAGATGAGCAAGTGACTGTGGCTTTGCACATAGGACTACCTAACACTCAATGTTTTGAGGATGAAGATGATCAGAAGAATAAGAAAGTTTCAGATGTGAAGGAAGAAAAAGAAGAAGAAGTGGTGAATAATAAAAGCTTTCAAGGTTGCTCTAAGAATTCTAACACAGAGAGAAGGTTCTGGATACCAACTCCAGCACAGATCCTTGTTGGGCCGATGCAGTTTACTTGCTCAATTTGCAGCAAGACCTTCAATAGGTATAATAACTTGCAGATGCATATGTGGGGTCATGGATCAGAGTATAGAAAAGGATCAGAATCATTGAAAGGGACACAACCAGCAGCAATGTTGAGGCTGCCATGTTACTGTTGTGCACAAGGCTGCAAGAACAACATAAACCATCCAAGAGGCAAGCCTCTTAAGGACTTCAGAACCCTACAAACACACTTCAAGAGGAAGCATGGTTCTAAGCCTTTTGTCTGCAGAAAATGCGCCAAAACCTTTGCCGTTAAAGGAGATTGGAGGACTCACGAGAAGAGCTGTGGCAAGTTCTGGTATTGCACTTGTGGTTCTGATTTTAAGCACAAGAGATCTCTCAAAGATCATATCAGATCCTTTGGAAAAGGTCACTCCCCTTGTTTTGATGAAGATGATCACAACAAGGAATATTCCATCCCTAGTACTGCTGCCTCTGAAGAATCTTAA 939 0.4068 MNLREYHSVHDKRVNFHTPTFFEWLKPSSYHPPTTSSSSSVIHDQETIQFLPILTEKPSKDQEGYRTIGVIKEKNDDDVDEQVTVALHIGLPNTQCFEDEDDQKNKKVSDVKEEKEEEVVNNKSFQGCSKNSNTERRFWIPTPAQILVGPMQFTCSICSKTFNRYNNLQMHMWGHGSEYRKGSESLKGTQPAAMLRLPCYCCAQGCKNNINHPRGKPLKDFRTLQTHFKRKHGSKPFVCRKCAKTFAVKGDWRTHEKSCGKFWYCTCGSDFKHKRSLKDHIRSFGKGHSPCFDEDDHNKEYSIPSTAASEES 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1041 312 PANTHER ZINC FINGER PROTEIN WIP2 26 299 IPR043584 GO:0003700|GO:0010468
Lele10g1041 312 Gene3D Classic Zinc Finger 235 284 - -
Lele10g1041 312 SUPERFAMILY beta-beta-alpha zinc fingers 139 176 IPR036236 -
Lele10g1041 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Lele10g1041 312 SUPERFAMILY beta-beta-alpha zinc fingers 223 257 IPR036236 -
Lele10g1041 312 SMART c2h2final6 200 232 IPR013087 -
Lele10g1041 312 SMART c2h2final6 153 175 IPR013087 -
Lele10g1041 312 SMART c2h2final6 237 257 IPR013087 -
Lele10g1041 312 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Lele10g1041 312 FunFam Zinc finger protein WIP2 206 288 - -
Lele10g1041 312 Pfam Zinc finger, C2H2 type 153 172 IPR013087 -
Lele10g1041 312 Gene3D Classic Zinc Finger 152 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1041 Lele-ChrLele10 21728487 21731366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1041 7 290 C2H2 Transcription Factor Family AT1G08290 55.120 5.53e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele10g1041 zf-C2H2_6 3.2e-05 CL0361