Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1033 ATGTATCATAATCACCAGAATCACGCAAAGAACATCCGTTCTTCTTCTTCTTCTTCCAGCAGAATGCCTATTCCTTCTGAGAGGCATTTGTTCCTTCAAAGTGGAAATGGGTCTGGAGATTCTGGACTTGTTCTTTCAACTGATGCTAAACCCAGGTTGAAGTGGACACCAGATCTCCATGCCAGATTTATTGAAGCAGTTAACCAGCTGGGAGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTTACTTTATATCATCTTAAGAGCCATCTTCAGTACAGACTGAGCAAGAATCTGCATGGACAAAGTAGCAATGTAACACAACACAAAATCACAACAAATGCAAGTGCCGTTAGTGGAGAAAGACTTTCTGAAGCAAATGGAACTCACAATCATATGAACAACCTAACCCTTGGGCTGCAGCAGCAAGCTAATAATAACAAAGATTTACATATAAGCGAGGCGTTGCAGATGCAGATTGAGGTGCAGAGAAGACTAAATGAACAACTTGAGGTTCAGAGACACTTGCAGCTCCGAATAGAGGCACAAGGGAAATACCTTCAGGCTGTTCTTGAGAAAGCTCAGGAGACGCTTGGAAGACAGAATTTAGGAATAGTAGGTCTTGAAGCTGCCAAAGTTCAACTCTCAGAACTAGTGTCCAAAGTATCTTCTCAATGTCTGAGTTCTGCTTTTTCAGAGCTGAAGGAATTAAACAGATTTAATAGCCCCCTTATCAACACAACAAGAACCAACCAACCCAATGACTGTTCAATGGACAGTAGCCTCACATCCTGCGATGGATCTCAAAGGGATCAGGAGAATATTCCAATTGGTGGTGGTATCTGCTTAACGAGACCTTTTAATGGCGGCCACACCTTCATGGAACCAAACAAGGACGCAGCAGCTGAGGTGAAAAAGAATAATAATAATAATTTTCTCAACCCTTTGGGCAAGAATATATCAGAAAGAACTACTACTGCTGGCAACTTAACAATGAGCATTGGAGTTGAAGGAGAAACAAGAAATGGAAGCAGCATCTATCCTGAGAGAATAATAATGGGGAGAGAATCAGATAATGATCAGTTCCAGCATCGAAGCAGCAATAATAGAACAGAAGGGATGAAATTAGCAGTGGACGAAAAAGTTTCTGGAGATTATAGATTGCCGTACTTTGCTACACCAAGATTAGACCTTAACACCCACCAAGAAAATAACGATGGTGCAGCGGGTTGCAAACAACTGGACCTGAATGGATTCAGTTGGAACTGA 1293 0.4192 MYHNHQNHAKNIRSSSSSSSRMPIPSERHLFLQSGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQYRLSKNLHGQSSNVTQHKITTNASAVSGERLSEANGTHNHMNNLTLGLQQQANNNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLSSAFSELKELNRFNSPLINTTRTNQPNDCSMDSSLTSCDGSQRDQENIPIGGGICLTRPFNGGHTFMEPNKDAAAEVKKNNNNNFLNPLGKNISERTTTAGNLTMSIGVEGETRNGSSIYPERIIMGRESDNDQFQHRSSNNRTEGMKLAVDEKVSGDYRLPYFATPRLDLNTHQENNDGAAGCKQLDLNGFSWN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1033 430 Pfam MYB-CC type transfactor, LHEQLE motif 159 205 IPR025756 -
Lele10g1033 430 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 50 102 IPR006447 GO:0003677
Lele10g1033 430 Coils Coil 161 181 - -
Lele10g1033 430 FunFam Two-component response regulator 46 107 - -
Lele10g1033 430 Pfam Myb-like DNA-binding domain 52 101 IPR001005 -
Lele10g1033 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Lele10g1033 430 Gene3D - 49 106 - -
Lele10g1033 430 MobiDBLite consensus disorder prediction 7 23 - -
Lele10g1033 430 MobiDBLite consensus disorder prediction 1 23 - -
Lele10g1033 430 SUPERFAMILY Homeodomain-like 49 101 IPR009057 -
Lele10g1033 430 MobiDBLite consensus disorder prediction 363 382 - -
Lele10g1033 430 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 364 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1033 Lele-ChrLele10 21661922 21664036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1033 82 430 G2-like Transcription Factor Family AT3G04030 47.899 6.26e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele10g1033 Myb_DNA-binding 1e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1033 10 21661922 21664036 Lele11g1068 11 17929547 17941562 hybridization
Lele10g1033 10 21661922 21664036 Lele12g0247 12 2185458 2188782 hybridization