Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1029 ATGCCACGAGGAAAGGCAAATTCTTCATCAGTTGCTAAGCCATCTGAACCTGAAAAGCCAACAGAGTCTGATGAGAGGGTTGATCTCGATGAAGAAAATGATCCTGAGGAAACGATGGAAGAAGAAATTGAATATGAAGAGGTAGAAGAAGAAGAGGAAGAAGAAGAGATAGAAGAGGAGGTAGAAGAAGAGGAGGAAGAGGAAGAGGTTGAAGAAGAAGATGATGATGATGATGATCATGCCAATGACACTGATGCCATGCAAAACATTAGCAGTGATGAGGCGAAGGTGGAAGATGAGGATGAGAAGAAAAAGAATGCAGAACTTCTCTCTCTTCCTCCTCACGGGTCTGAAGTTTACATTGGTGGCATTCCTCATGATGCCTCAGGCGAGGATTTGAAGGCTTTTTGTGAGTCTATTGGGGAAGTTACAGAGGTTAGGGTTATGAAAGGAAAAGATTCTGCTGAAAACAAGGGCTTTGGTTTTGTGACCTTCAAAAGTGTGGAATTGGCTTCTAAAGCCATTGAAGAGCTGAATAATAAACAATTTAAGGGTAAAAAGATAAAATGTTCATCATCTCAAGCAAAACACCGACTTTTCATTGGTAATGTTCCTAGAAGCTGGGGAGATGAGGATCTAAGGAAGGTTGTAACTGAGATTGGGCCTGGAGTTACGAGTGTGGAACTAGTCAAGGATATGAAGCACCCAACAAACAATCGTGGTTTTGCTTTTGTCAACTATTATAATCATGCATGTGCTGAATATTCAAGGAAAAAGATGATGGATTCAAAATTCAAGCTAGGTAACAATGCTCCGACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCATCTGCTACATCTCAGGTGAGGGCAGTATATGTCAAGAACTTACCTAAGGATGTAACTGGAGATGAACTAAGGAAACTTTTTGAACACCATGGGAAGATTTCAAAGGTGGTTCTGCCACCAGCAAAGTCTGGGCAAGAAAAGAACAGAATTGGCTTTGTACATTTTGTGGAGAAGTCAAGTGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAAATGGTCAAGTTTTGGAGTGTTCTCTAGCAAAGCCACAGGTAGATAAGTCTGGAGGATCAAATACACCGCAAGCAGGATTGCTTCCTGGCTACCCTCCCCGTGTTGGCTATAATTTGATAGGAGGTGCCTATGGCGGGCTAGGCGCTGGATATGGTGCTGCAGGTCTTGCACAGGTGGCACATCCCATGATACATGGAAGGGGTCCAGCTCCAGCTGGAATGTCCATGATGCCCATGCTTTTGCCTGATGGACGAATTGGATATGTCCTGCAACAACCAGGAATGCAGCCACAGACCCCACCTGCACAGCCGAGAGGTGGCAGAAATGGAGGGAGTGGCAGCAGGAATTTCGGCAGTTCAAGCAAGGGAAGGCATAACAATTCTAGTGGCCAAGGGCGCAGATATCGTCCATATTAG 1488 0.4402 MPRGKANSSSVAKPSEPEKPTESDERVDLDEENDPEETMEEEIEYEEVEEEEEEEEIEEEVEEEEEEEEVEEEDDDDDDHANDTDAMQNISSDEAKVEDEDEKKKNAELLSLPPHGSEVYIGGIPHDASGEDLKAFCESIGEVTEVRVMKGKDSAENKGFGFVTFKSVELASKAIEELNNKQFKGKKIKCSSSQAKHRLFIGNVPRSWGDEDLRKVVTEIGPGVTSVELVKDMKHPTNNRGFAFVNYYNHACAEYSRKKMMDSKFKLGNNAPTVSWADPKNADSSATSQVRAVYVKNLPKDVTGDELRKLFEHHGKISKVVLPPAKSGQEKNRIGFVHFVEKSSAMKALKNTERYELNGQVLECSLAKPQVDKSGGSNTPQAGLLPGYPPRVGYNLIGGAYGGLGAGYGAAGLAQVAHPMIHGRGPAPAGMSMMPMLLPDGRIGYVLQQPGMQPQTPPAQPRGGRNGGSGSRNFGSSSKGRHNNSSGQGRRYRPY 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1029 495 MobiDBLite consensus disorder prediction 27 82 - -
Lele10g1029 495 SMART rrm1_1 198 275 IPR000504 GO:0003723
Lele10g1029 495 SMART rrm1_1 118 191 IPR000504 GO:0003723
Lele10g1029 495 SMART rrm1_1 292 365 IPR000504 GO:0003723
Lele10g1029 495 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7 481 - -
Lele10g1029 495 Gene3D - 37 197 IPR012677 -
Lele10g1029 495 Gene3D - 198 278 IPR012677 -
Lele10g1029 495 SMART rrm2_1 292 365 IPR003954 GO:0003676
Lele10g1029 495 SMART rrm2_1 118 191 IPR003954 GO:0003676
Lele10g1029 495 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 198 278 - -
Lele10g1029 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Lele10g1029 495 SUPERFAMILY RNA-binding domain, RBD 198 281 IPR035979 GO:0003676
Lele10g1029 495 Coils Coil 36 74 - -
Lele10g1029 495 MobiDBLite consensus disorder prediction 1 116 - -
Lele10g1029 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 362 IPR000504 GO:0003723
Lele10g1029 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 264 IPR000504 GO:0003723
Lele10g1029 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 189 IPR000504 GO:0003723
Lele10g1029 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Lele10g1029 495 SUPERFAMILY RNA-binding domain, RBD 114 369 IPR035979 GO:0003676
Lele10g1029 495 Gene3D - 279 383 IPR012677 -
Lele10g1029 495 MobiDBLite consensus disorder prediction 92 109 - -
Lele10g1029 495 MobiDBLite consensus disorder prediction 447 495 - -
Lele10g1029 495 CDD RRM_SF 119 191 - -
Lele10g1029 495 FunFam RNA recognition motif-containing protein 21 197 - -
Lele10g1029 495 MobiDBLite consensus disorder prediction 449 495 - -
Lele10g1029 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 279 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1029 Lele-ChrLele10 21639667 21643010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g1029 117 373 Eukaryotic Initiation Factors Gene Family AT1G71770 26.296 1.72e-17 83.6